Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29378 | 5' | -63.9 | NC_006151.1 | + | 121406 | 0.68 | 0.411014 |
Target: 5'- gGCCUgcggcgcgggcggGGACgUCGCGGGGCUcGCgccggcCUCGc -3' miRNA: 3'- -CGGA-------------CCUGgGGCGCCCCGA-CGa-----GAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 106996 | 0.68 | 0.411838 |
Target: 5'- uGCCUGG-CgCCGCagcuGGaGCgGCUCUCGg -3' miRNA: 3'- -CGGACCuGgGGCGc---CC-CGaCGAGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 36385 | 0.68 | 0.428545 |
Target: 5'- gGCCgGGGCCCC-CGGcGGCcccggGCgCUCGu -3' miRNA: 3'- -CGGaCCUGGGGcGCC-CCGa----CGaGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 130654 | 0.68 | 0.443056 |
Target: 5'- cGCCUGcggcgugaacgucaGugCCCGCGGGGCgcgGCg--Ca -3' miRNA: 3'- -CGGAC--------------CugGGGCGCCCCGa--CGagaGc -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 64478 | 0.68 | 0.445645 |
Target: 5'- cGCCgcggcggGGACgCCCGCGGGcGCggGCgg-CGg -3' miRNA: 3'- -CGGa------CCUG-GGGCGCCC-CGa-CGagaGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 86542 | 0.68 | 0.454337 |
Target: 5'- cGCCcGaGGCCgCCGUGGcgccguuccGGCaGCUCUCGg -3' miRNA: 3'- -CGGaC-CUGG-GGCGCC---------CCGaCGAGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 102446 | 0.68 | 0.454337 |
Target: 5'- gGCgCUGGACgcgcucgagUCCG-GGGGCUccuacgcgcaGCUCUCGg -3' miRNA: 3'- -CG-GACCUG---------GGGCgCCCCGA----------CGAGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 7014 | 0.68 | 0.454337 |
Target: 5'- uGUCcGGcCCCCGCGGcGGCca-UCUCGg -3' miRNA: 3'- -CGGaCCuGGGGCGCC-CCGacgAGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 6849 | 0.67 | 0.480946 |
Target: 5'- uGCCcGGcCCCCGCGGcGGCca-UCUUGc -3' miRNA: 3'- -CGGaCCuGGGGCGCC-CCGacgAGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 2281 | 0.67 | 0.489984 |
Target: 5'- gGCCggcgGGGCgCCCGCGGcGGCgacgGCgCcCGg -3' miRNA: 3'- -CGGa---CCUG-GGGCGCC-CCGa---CGaGaGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 136618 | 0.67 | 0.489984 |
Target: 5'- cGCCgucaacgucacGGACCCCGCggcgcccguGGGGC-GCUCgccccUCGg -3' miRNA: 3'- -CGGa----------CCUGGGGCG---------CCCCGaCGAG-----AGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 5531 | 0.67 | 0.4991 |
Target: 5'- gGCCgaGGaucgagccGCCUCGCGGcGGCggGCUCgUCGa -3' miRNA: 3'- -CGGa-CC--------UGGGGCGCC-CCGa-CGAG-AGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 131503 | 0.67 | 0.502768 |
Target: 5'- aCCaGGAgcCCCgCGCGGGggaacggcuggaagcGCUGCUCUUGc -3' miRNA: 3'- cGGaCCU--GGG-GCGCCC---------------CGACGAGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 63815 | 0.67 | 0.508291 |
Target: 5'- cGCC-GGGCCCC--GGGGC-GCcCUCGa -3' miRNA: 3'- -CGGaCCUGGGGcgCCCCGaCGaGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 121770 | 0.67 | 0.508291 |
Target: 5'- aGCgCUGcGACCCCGCGGuGG-UGCg--CGa -3' miRNA: 3'- -CG-GAC-CUGGGGCGCC-CCgACGagaGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 106549 | 0.67 | 0.509214 |
Target: 5'- -gCUGGcgcgcaugugcauccCCCCGC--GGCUGCUCUCGg -3' miRNA: 3'- cgGACCu--------------GGGGCGccCCGACGAGAGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 18751 | 0.66 | 0.517553 |
Target: 5'- cGCCgGGGCCCCaCGGGG-UGC-C-CGg -3' miRNA: 3'- -CGGaCCUGGGGcGCCCCgACGaGaGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 98343 | 0.66 | 0.517553 |
Target: 5'- gGCCgcgaGACgCCCGCGGGcGUgcgcggGCUCUgGg -3' miRNA: 3'- -CGGac--CUG-GGGCGCCC-CGa-----CGAGAgC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 125202 | 0.66 | 0.535331 |
Target: 5'- cGUCgUGGGCCCCGCGGcccccgcGGCcGCcCgUCGg -3' miRNA: 3'- -CGG-ACCUGGGGCGCC-------CCGaCGaG-AGC- -5' |
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29378 | 5' | -63.9 | NC_006151.1 | + | 39263 | 0.66 | 0.536272 |
Target: 5'- cGCCUcaacGCCCaGgGGGugcuGCUGCUCUCGg -3' miRNA: 3'- -CGGAcc--UGGGgCgCCC----CGACGAGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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