Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29378 | 5' | -63.9 | NC_006151.1 | + | 6074 | 0.73 | 0.203701 |
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Target: 5'- cGCCcGaGCCCCgGCGGGGCUGCUgCUg- -3' miRNA: 3'- -CGGaCcUGGGG-CGCCCCGACGA-GAgc -5' |
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| 29378 | 5' | -63.9 | NC_006151.1 | + | 106646 | 0.74 | 0.184851 |
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Target: 5'- cGCCUGGACgCCGCGGcgcacgugcgcgaGGCcGCggcgCUCGg -3' miRNA: 3'- -CGGACCUGgGGCGCC-------------CCGaCGa---GAGC- -5' |
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| 29378 | 5' | -63.9 | NC_006151.1 | + | 49167 | 0.74 | 0.180925 |
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Target: 5'- gGCCUGGGCgCgCCGCGGGGUgcUGCUgCUg- -3' miRNA: 3'- -CGGACCUG-G-GGCGCCCCG--ACGA-GAgc -5' |
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| 29378 | 5' | -63.9 | NC_006151.1 | + | 127402 | 0.74 | 0.172463 |
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Target: 5'- gGCCgagucgacgGGAgCCCGCGGGGUcGC-CUCGg -3' miRNA: 3'- -CGGa--------CCUgGGGCGCCCCGaCGaGAGC- -5' |
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| 29378 | 5' | -63.9 | NC_006151.1 | + | 8187 | 0.77 | 0.116631 |
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Target: 5'- gGCCgGGACCCCG-GGGGC-GCUC-CGg -3' miRNA: 3'- -CGGaCCUGGGGCgCCCCGaCGAGaGC- -5' |
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| 29378 | 5' | -63.9 | NC_006151.1 | + | 106783 | 0.81 | 0.065288 |
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Target: 5'- cGCCUGGACCuggCCGCGGcGGCggUGCUCgUCGg -3' miRNA: 3'- -CGGACCUGG---GGCGCC-CCG--ACGAG-AGC- -5' |
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| 29378 | 5' | -63.9 | NC_006151.1 | + | 136352 | 1.09 | 0.000579 |
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Target: 5'- gGCCUGGACCCCGCGGGGCUGCUCUCGu -3' miRNA: 3'- -CGGACCUGGGGCGCCCCGACGAGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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