miRNA display CGI


Results 61 - 80 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 38636 0.68 0.872717
Target:  5'- gGcCCUCcGCGGGGacgGCCACGGCcacCGCg -3'
miRNA:   3'- gC-GGAGaUGCCCU---UGGUGUUGu--GCGg -5'
29379 3' -54.5 NC_006151.1 + 39199 0.69 0.857621
Target:  5'- cCGCCUCUGCac--GCCGgAcucGCACGCCu -3'
miRNA:   3'- -GCGGAGAUGcccuUGGUgU---UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 39288 0.68 0.865275
Target:  5'- uGCuCUCgGCGcGGGACCuCGGCuuCGCCg -3'
miRNA:   3'- gCG-GAGaUGC-CCUUGGuGUUGu-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 39465 0.66 0.94403
Target:  5'- gCGCCgugcgCUGgccCGGGuGCCGCGAgcucCGCGCg -3'
miRNA:   3'- -GCGGa----GAU---GCCCuUGGUGUU----GUGCGg -5'
29379 3' -54.5 NC_006151.1 + 39738 0.66 0.956507
Target:  5'- cCGCgCUCgggcuCGGGGACCcgGACuuugacgcggGCGCCg -3'
miRNA:   3'- -GCG-GAGau---GCCCUUGGugUUG----------UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 39837 0.67 0.929422
Target:  5'- uCGUCUcCUGCGGccGCCGgGGCcuCGCCg -3'
miRNA:   3'- -GCGGA-GAUGCCcuUGGUgUUGu-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 39912 0.71 0.73232
Target:  5'- gCGCCgcgggCUGCuGGAGCC-CGACGCcgagGCCg -3'
miRNA:   3'- -GCGGa----GAUGcCCUUGGuGUUGUG----CGG- -5'
29379 3' -54.5 NC_006151.1 + 40070 0.66 0.939401
Target:  5'- gGCC-C-GCGGGGGCCuc-GgGCGCCg -3'
miRNA:   3'- gCGGaGaUGCCCUUGGuguUgUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 41466 0.71 0.729357
Target:  5'- gGCCg--GCGGGAcgaugacgacggcgACCGCGugGCGCg -3'
miRNA:   3'- gCGGagaUGCCCU--------------UGGUGUugUGCGg -5'
29379 3' -54.5 NC_006151.1 + 44169 0.66 0.948423
Target:  5'- uGCCcCU--GGGAgcACCGCGGguCGCCg -3'
miRNA:   3'- gCGGaGAugCCCU--UGGUGUUguGCGG- -5'
29379 3' -54.5 NC_006151.1 + 45523 0.68 0.871983
Target:  5'- aGCCgUCgacccaccGCGGGAgggcccgcuucccACgACGGCGCGCCc -3'
miRNA:   3'- gCGG-AGa-------UGCCCU-------------UGgUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 46490 0.68 0.864519
Target:  5'- gCGCCUCgagcaGCGGGGugCACAcggaggaucugacGgAgGCCu -3'
miRNA:   3'- -GCGGAGa----UGCCCUugGUGU-------------UgUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 47500 0.67 0.905953
Target:  5'- gGCCagaguguCGGGAGCCACcgcuaauugcaguAACGCGCg -3'
miRNA:   3'- gCGGagau---GCCCUUGGUG-------------UUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 48944 0.69 0.856844
Target:  5'- uGCC-CgcgcGCGaGGAcguguucGCCugGACGCGCCu -3'
miRNA:   3'- gCGGaGa---UGC-CCU-------UGGugUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 49148 0.73 0.630848
Target:  5'- cCGCCcacggCUGCcuGGAgGCCugGGCGCGCCg -3'
miRNA:   3'- -GCGGa----GAUGc-CCU-UGGugUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 50430 0.68 0.900263
Target:  5'- gCGCCcCUGCGcgccGGcGGCCugGGCAcCGCCc -3'
miRNA:   3'- -GCGGaGAUGC----CC-UUGGugUUGU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 50635 0.66 0.945816
Target:  5'- aCGCCUCgGCGacggccgcgggcGGAcccgagucgugcgcgGCCGCAccccCGCGCCg -3'
miRNA:   3'- -GCGGAGaUGC------------CCU---------------UGGUGUu---GUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 50767 0.69 0.833449
Target:  5'- aCGCCUCgacgACGGccGCCcCGACGCcCCa -3'
miRNA:   3'- -GCGGAGa---UGCCcuUGGuGUUGUGcGG- -5'
29379 3' -54.5 NC_006151.1 + 51104 0.68 0.886944
Target:  5'- cCGCCUCUcacuccaggauGCGGGccuCgCGCAGgGCGUCc -3'
miRNA:   3'- -GCGGAGA-----------UGCCCuu-G-GUGUUgUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 51286 0.66 0.934532
Target:  5'- gCGCC-CU-CGGGGGCCGCcggccaggucCGCGCg -3'
miRNA:   3'- -GCGGaGAuGCCCUUGGUGuu--------GUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.