miRNA display CGI


Results 41 - 60 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 24920 0.66 0.956507
Target:  5'- aGCCcgaCUGCaGGGGCUGCAGCACcUCg -3'
miRNA:   3'- gCGGa--GAUGcCCUUGGUGUUGUGcGG- -5'
29379 3' -54.5 NC_006151.1 + 26342 0.77 0.416537
Target:  5'- cCGCCUC-ACGGG-GCgGCGGCGgGCCg -3'
miRNA:   3'- -GCGGAGaUGCCCuUGgUGUUGUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 27189 0.67 0.906573
Target:  5'- gCGCCa----GGGGGCCGCGcagaAgGCGCCg -3'
miRNA:   3'- -GCGGagaugCCCUUGGUGU----UgUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 28566 0.68 0.89372
Target:  5'- cCGCgUCc-CGGGAGcCCGCA-UugGCCg -3'
miRNA:   3'- -GCGgAGauGCCCUU-GGUGUuGugCGG- -5'
29379 3' -54.5 NC_006151.1 + 29132 0.67 0.929422
Target:  5'- gGCCgggaagucGCGGGAGCgCGCGugAccCGCCg -3'
miRNA:   3'- gCGGaga-----UGCCCUUG-GUGUugU--GCGG- -5'
29379 3' -54.5 NC_006151.1 + 30246 0.73 0.661667
Target:  5'- gCGCCg--GCGGGAGagACGACggGCGCCa -3'
miRNA:   3'- -GCGGagaUGCCCUUggUGUUG--UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 30373 0.7 0.798673
Target:  5'- gCGCCUCgaUGCGGcccGAaucGCCGCGACGCGa- -3'
miRNA:   3'- -GCGGAG--AUGCC---CU---UGGUGUUGUGCgg -5'
29379 3' -54.5 NC_006151.1 + 31613 0.75 0.529292
Target:  5'- cCGCCUggGCGGGGauGCCGCGccggcacgagcGCACGCg -3'
miRNA:   3'- -GCGGAgaUGCCCU--UGGUGU-----------UGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 31742 0.66 0.945816
Target:  5'- gCGCCcgCgcCGGGGACgCGCcugcggcggcgggcGCGCGCCg -3'
miRNA:   3'- -GCGGa-GauGCCCUUG-GUGu-------------UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 32052 0.74 0.589804
Target:  5'- cCGCCUCUGCaGccGCCGCc-CGCGCCg -3'
miRNA:   3'- -GCGGAGAUGcCcuUGGUGuuGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 32189 0.66 0.943124
Target:  5'- cCGCCUUUccuucccggacuCGGGAGCCGCucC-CGCUc -3'
miRNA:   3'- -GCGGAGAu-----------GCCCUUGGUGuuGuGCGG- -5'
29379 3' -54.5 NC_006151.1 + 33911 0.66 0.934532
Target:  5'- gCGCCUCcgcguccgGCGGGcgGAUCGaggcccGCGCGCCc -3'
miRNA:   3'- -GCGGAGa-------UGCCC--UUGGUgu----UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 35246 0.69 0.84976
Target:  5'- gGCCgCcGCGGGGGCCG-GACAUGCa -3'
miRNA:   3'- gCGGaGaUGCCCUUGGUgUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 35412 0.68 0.886944
Target:  5'- gGCCgCcGCGGGGGCCG-GGCAUGCa -3'
miRNA:   3'- gCGGaGaUGCCCUUGGUgUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 36130 0.69 0.833449
Target:  5'- gGCCgcgGCcGGAGCCACGAgGcCGCCc -3'
miRNA:   3'- gCGGagaUGcCCUUGGUGUUgU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 36531 0.67 0.929422
Target:  5'- gGCCUCggACcccGGcGCCAcCAGCACaGCCa -3'
miRNA:   3'- gCGGAGa-UGc--CCuUGGU-GUUGUG-CGG- -5'
29379 3' -54.5 NC_006151.1 + 36863 0.82 0.240766
Target:  5'- gGCCUCgcCGGGGACgGCGGgGCGCCc -3'
miRNA:   3'- gCGGAGauGCCCUUGgUGUUgUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 37551 0.67 0.924071
Target:  5'- gCGCCUCaucuacaGCGGG-GCCGcCGGCGagGCCa -3'
miRNA:   3'- -GCGGAGa------UGCCCuUGGU-GUUGUg-CGG- -5'
29379 3' -54.5 NC_006151.1 + 37702 0.67 0.906573
Target:  5'- cCGCCgCUGCcgcacaucgGGGAcGCCAUGGC-CGCCc -3'
miRNA:   3'- -GCGGaGAUG---------CCCU-UGGUGUUGuGCGG- -5'
29379 3' -54.5 NC_006151.1 + 37854 0.67 0.918478
Target:  5'- gGCCUaccCGGGccgcGCCGCGGaccccCGCGCCg -3'
miRNA:   3'- gCGGAgauGCCCu---UGGUGUU-----GUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.