miRNA display CGI


Results 41 - 60 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 49148 0.73 0.630848
Target:  5'- cCGCCcacggCUGCcuGGAgGCCugGGCGCGCCg -3'
miRNA:   3'- -GCGGa----GAUGc-CCU-UGGugUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 664 0.73 0.641131
Target:  5'- gGCCgggGCGGGcuCCGCGgaucgcaucgGCGCGCCg -3'
miRNA:   3'- gCGGagaUGCCCuuGGUGU----------UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 69711 0.73 0.641131
Target:  5'- cCGCCgc--CGGGGGCaGCAGCGCGUCg -3'
miRNA:   3'- -GCGGagauGCCCUUGgUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 53979 0.73 0.651407
Target:  5'- gCGCCUCcGCGGGcgUCGCGgcgagcucccggACGCGCUc -3'
miRNA:   3'- -GCGGAGaUGCCCuuGGUGU------------UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 99325 0.73 0.661667
Target:  5'- cCGCCUg-ACGG--ACgCGCAGCGCGCCg -3'
miRNA:   3'- -GCGGAgaUGCCcuUG-GUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 30246 0.73 0.661667
Target:  5'- gCGCCg--GCGGGAGagACGACggGCGCCa -3'
miRNA:   3'- -GCGGagaUGCCCUUggUGUUG--UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 131118 0.72 0.682107
Target:  5'- gGCCgCggcGCGGGAgGCCGCGGCGCcgcgGCCg -3'
miRNA:   3'- gCGGaGa--UGCCCU-UGGUGUUGUG----CGG- -5'
29379 3' -54.5 NC_006151.1 + 73369 0.72 0.682107
Target:  5'- uGCCcauguccgUC-ACGGGGGCgCGCAGCGCgGCCg -3'
miRNA:   3'- gCGG--------AGaUGCCCUUG-GUGUUGUG-CGG- -5'
29379 3' -54.5 NC_006151.1 + 136683 0.72 0.686177
Target:  5'- cCGCCUUcuuccgccacgUGCGGGcgcagcucaacauCCGCGACACGUCg -3'
miRNA:   3'- -GCGGAG-----------AUGCCCuu-----------GGUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 102027 0.72 0.69227
Target:  5'- gGCUUCgccgucCGGGAGCUGgAGCugGCCc -3'
miRNA:   3'- gCGGAGau----GCCCUUGGUgUUGugCGG- -5'
29379 3' -54.5 NC_006151.1 + 90678 0.72 0.69227
Target:  5'- gGCCgCUugucccccgcgGCGGGGGCgGCGgACGCGCCc -3'
miRNA:   3'- gCGGaGA-----------UGCCCUUGgUGU-UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 101410 0.72 0.702381
Target:  5'- gGCCUCU--GGG---CGCAGCGCGCCg -3'
miRNA:   3'- gCGGAGAugCCCuugGUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 127364 0.72 0.71143
Target:  5'- uCGCC-CUggGCGGGGACCGCGGggguggcgggggcCGCgGCCg -3'
miRNA:   3'- -GCGGaGA--UGCCCUUGGUGUU-------------GUG-CGG- -5'
29379 3' -54.5 NC_006151.1 + 66614 0.71 0.719428
Target:  5'- cCGCCUacgACGGcGAgcgccuggccuuccACCGCAACGCGUa -3'
miRNA:   3'- -GCGGAga-UGCC-CU--------------UGGUGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 120579 0.71 0.722415
Target:  5'- gCGCUUCU-CGGuGGACUACG--GCGCCa -3'
miRNA:   3'- -GCGGAGAuGCC-CUUGGUGUugUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 105010 0.71 0.722415
Target:  5'- cCGCCUCcGCGGaGGAgCugGugACGCa -3'
miRNA:   3'- -GCGGAGaUGCC-CUUgGugUugUGCGg -5'
29379 3' -54.5 NC_006151.1 + 124690 0.71 0.722415
Target:  5'- gGCC-C-ACGGGGAgCACAucggcuACGCGCCc -3'
miRNA:   3'- gCGGaGaUGCCCUUgGUGU------UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 121918 0.71 0.722415
Target:  5'- gGCCg--AgGGGGACCGCGugcugggggcGCugGCCg -3'
miRNA:   3'- gCGGagaUgCCCUUGGUGU----------UGugCGG- -5'
29379 3' -54.5 NC_006151.1 + 107065 0.71 0.722415
Target:  5'- uGCCUCgUGCuGGuGGACuCGCAGCugGCg -3'
miRNA:   3'- gCGGAG-AUG-CC-CUUG-GUGUUGugCGg -5'
29379 3' -54.5 NC_006151.1 + 41466 0.71 0.729357
Target:  5'- gGCCg--GCGGGAcgaugacgacggcgACCGCGugGCGCg -3'
miRNA:   3'- gCGGagaUGCCCU--------------UGGUGUugUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.