miRNA display CGI


Results 41 - 60 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 82308 0.66 0.94403
Target:  5'- gCGCCUCcgcguccGCGaGGAcgGCCACcuccGCGgGCCa -3'
miRNA:   3'- -GCGGAGa------UGC-CCU--UGGUGu---UGUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 132635 0.66 0.94403
Target:  5'- cCGCCgUCgGCGcccGGACCugGGC-CGCCa -3'
miRNA:   3'- -GCGG-AGaUGCc--CUUGGugUUGuGCGG- -5'
29379 3' -54.5 NC_006151.1 + 82647 0.66 0.94403
Target:  5'- -cCCcCUGCGGcGAgggcggcccACCcuGCGGCGCGCCg -3'
miRNA:   3'- gcGGaGAUGCC-CU---------UGG--UGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 132832 0.66 0.94403
Target:  5'- cCGCC-C-GCGGGAcgGCCACcACGgGCg -3'
miRNA:   3'- -GCGGaGaUGCCCU--UGGUGuUGUgCGg -5'
29379 3' -54.5 NC_006151.1 + 32189 0.66 0.943124
Target:  5'- cCGCCUUUccuucccggacuCGGGAGCCGCucC-CGCUc -3'
miRNA:   3'- -GCGGAGAu-----------GCCCUUGGUGuuGuGCGG- -5'
29379 3' -54.5 NC_006151.1 + 123940 0.66 0.942207
Target:  5'- gGCCUCgccgacgcccgggACGGGcGCCACccccAACgACGUCu -3'
miRNA:   3'- gCGGAGa------------UGCCCuUGGUG----UUG-UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 57323 0.66 0.941281
Target:  5'- aGCCgcugCgcgACGGGaAGCCgACAAaguccgcggggcccuCGCGCCg -3'
miRNA:   3'- gCGGa---Ga--UGCCC-UUGG-UGUU---------------GUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 5307 0.66 0.941281
Target:  5'- uGCCgcugCUGCuGGAgcugcugaagccgcgGCCGCGGCggaggGCGCCc -3'
miRNA:   3'- gCGGa---GAUGcCCU---------------UGGUGUUG-----UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 13429 0.66 0.939401
Target:  5'- cCGCgUCccCGGGGcCCGCA-UugGCCg -3'
miRNA:   3'- -GCGgAGauGCCCUuGGUGUuGugCGG- -5'
29379 3' -54.5 NC_006151.1 + 40070 0.66 0.939401
Target:  5'- gGCC-C-GCGGGGGCCuc-GgGCGCCg -3'
miRNA:   3'- gCGGaGaUGCCCUUGGuguUgUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 52429 0.66 0.939401
Target:  5'- uGCUcCU-CGGGcACgCGCAGCGcCGCCg -3'
miRNA:   3'- gCGGaGAuGCCCuUG-GUGUUGU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 84619 0.66 0.939401
Target:  5'- nCGCCgc-GCGGccGCCGCGGCgcuggacaACGCCa -3'
miRNA:   3'- -GCGGagaUGCCcuUGGUGUUG--------UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 87167 0.66 0.939401
Target:  5'- aCGCCguaCUACGcgc-CCGCGGCGcCGCCg -3'
miRNA:   3'- -GCGGa--GAUGCccuuGGUGUUGU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 88049 0.66 0.939401
Target:  5'- uGuCCUCgaagACGGGcAGCUGCGaggGCAgGCCc -3'
miRNA:   3'- gC-GGAGa---UGCCC-UUGGUGU---UGUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 89534 0.66 0.939401
Target:  5'- cCGCCUCgagcaGCGccgaggccgguGGAgGCCGCGaggcugauggGCACGCCc -3'
miRNA:   3'- -GCGGAGa----UGC-----------CCU-UGGUGU----------UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 118902 0.66 0.939401
Target:  5'- cCGCCg--GCGGccucGAgcGCCGCAugGCGUCc -3'
miRNA:   3'- -GCGGagaUGCC----CU--UGGUGUugUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 128403 0.66 0.938925
Target:  5'- gGCCacgACGGcGGccgugagGCCGC-ACACGCCg -3'
miRNA:   3'- gCGGagaUGCC-CU-------UGGUGuUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 6366 0.66 0.938925
Target:  5'- gGUCUCgauCGGGGucuuucuGCCugAGCgaggccggGCGCCg -3'
miRNA:   3'- gCGGAGau-GCCCU-------UGGugUUG--------UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 89840 0.66 0.937965
Target:  5'- uGCCggcguaggcgugggUgUGCGGGAcggucGCCucguaGACGCGCCg -3'
miRNA:   3'- gCGG--------------AgAUGCCCU-----UGGug---UUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 90386 0.66 0.934532
Target:  5'- aCGCCgcggGCGGGAcggACAGCAUGCa -3'
miRNA:   3'- -GCGGaga-UGCCCUuggUGUUGUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.