miRNA display CGI


Results 61 - 80 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 98201 0.66 0.934532
Target:  5'- gCGCCgc-GCGGGgucgaGugCGCGGCGgCGCCc -3'
miRNA:   3'- -GCGGagaUGCCC-----UugGUGUUGU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 105680 0.66 0.934532
Target:  5'- gGCCUaCggcgGCGcGGGGCCGacgcCGGCGCgGCCg -3'
miRNA:   3'- gCGGA-Ga---UGC-CCUUGGU----GUUGUG-CGG- -5'
29379 3' -54.5 NC_006151.1 + 127407 0.66 0.934532
Target:  5'- aGUCg--ACGGGAGCCcGCGGgGuCGCCu -3'
miRNA:   3'- gCGGagaUGCCCUUGG-UGUUgU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 139244 0.66 0.934532
Target:  5'- gCGUCUCcgGCGcGAcgGCCACGcccGCGCGCUc -3'
miRNA:   3'- -GCGGAGa-UGCcCU--UGGUGU---UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 140304 0.66 0.934532
Target:  5'- gCGCCgcCUGCGGGacGugCGCuGCAuCGUCa -3'
miRNA:   3'- -GCGGa-GAUGCCC--UugGUGuUGU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 4043 0.66 0.934532
Target:  5'- gGCCUC-GCGGGcgcgGGCCcCGucCACGCUg -3'
miRNA:   3'- gCGGAGaUGCCC----UUGGuGUu-GUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 33911 0.66 0.934532
Target:  5'- gCGCCUCcgcguccgGCGGGcgGAUCGaggcccGCGCGCCc -3'
miRNA:   3'- -GCGGAGa-------UGCCC--UUGGUgu----UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 125039 0.66 0.934532
Target:  5'- aCGCCaUCUAcCGGcGGcGCUACAacaGCACGCa -3'
miRNA:   3'- -GCGG-AGAU-GCC-CU-UGGUGU---UGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 90386 0.66 0.934532
Target:  5'- aCGCCgcggGCGGGAcggACAGCAUGCa -3'
miRNA:   3'- -GCGGaga-UGCCCUuggUGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 59935 0.66 0.934532
Target:  5'- gCGCCgUCaGCGGcGGCuCGCAGCccucgaGCGCCa -3'
miRNA:   3'- -GCGG-AGaUGCCcUUG-GUGUUG------UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 54599 0.66 0.934532
Target:  5'- uGCCUCgGCGuGGucccgGugCGCcgGGCGCGCCc -3'
miRNA:   3'- gCGGAGaUGC-CC-----UugGUG--UUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 51286 0.66 0.934532
Target:  5'- gCGCC-CU-CGGGGGCCGCcggccaggucCGCGCg -3'
miRNA:   3'- -GCGGaGAuGCCCUUGGUGuu--------GUGCGg -5'
29379 3' -54.5 NC_006151.1 + 130404 0.66 0.933024
Target:  5'- gCGCCUCgcccgcgagcGCGGGcgcGCCgaccgucgaggacuGCAGCgGCGCCa -3'
miRNA:   3'- -GCGGAGa---------UGCCCu--UGG--------------UGUUG-UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 36531 0.67 0.929422
Target:  5'- gGCCUCggACcccGGcGCCAcCAGCACaGCCa -3'
miRNA:   3'- gCGGAGa-UGc--CCuUGGU-GUUGUG-CGG- -5'
29379 3' -54.5 NC_006151.1 + 39837 0.67 0.929422
Target:  5'- uCGUCUcCUGCGGccGCCGgGGCcuCGCCg -3'
miRNA:   3'- -GCGGA-GAUGCCcuUGGUgUUGu-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 64328 0.67 0.929422
Target:  5'- gGCCUCgcaccacgucgGCGGGAAgCGCgGGC-CGUCg -3'
miRNA:   3'- gCGGAGa----------UGCCCUUgGUG-UUGuGCGG- -5'
29379 3' -54.5 NC_006151.1 + 117648 0.67 0.929422
Target:  5'- aCGCCgcgCUGCuccGGGGcguccaggcACCGCGGCGCGa- -3'
miRNA:   3'- -GCGGa--GAUG---CCCU---------UGGUGUUGUGCgg -5'
29379 3' -54.5 NC_006151.1 + 89476 0.67 0.929422
Target:  5'- cCGCgUCacgugcgcgGCGGcGAGCCGguACGCGCg -3'
miRNA:   3'- -GCGgAGa--------UGCC-CUUGGUguUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 118977 0.67 0.929422
Target:  5'- cCGCCggCguguacgACGaGGAGCCccccgcgcuggACGACugGCCc -3'
miRNA:   3'- -GCGGa-Ga------UGC-CCUUGG-----------UGUUGugCGG- -5'
29379 3' -54.5 NC_006151.1 + 29132 0.67 0.929422
Target:  5'- gGCCgggaagucGCGGGAGCgCGCGugAccCGCCg -3'
miRNA:   3'- gCGGaga-----UGCCCUUG-GUGUugU--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.