miRNA display CGI


Results 41 - 60 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 124036 0.66 0.956507
Target:  5'- gGCCcCcgacggcgagUACGGcGACCugGACGCGCg -3'
miRNA:   3'- gCGGaG----------AUGCCcUUGGugUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 39738 0.66 0.956507
Target:  5'- cCGCgCUCgggcuCGGGGACCcgGACuuugacgcggGCGCCg -3'
miRNA:   3'- -GCG-GAGau---GCCCUUGGugUUG----------UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 56332 0.66 0.956507
Target:  5'- gGCCggugGCuGGAGCgCGCG-CGCGCCc -3'
miRNA:   3'- gCGGaga-UGcCCUUG-GUGUuGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 65796 0.66 0.956507
Target:  5'- gCGCCgcccgGCGcGGAcguGCCGCGGuggaugggcggcCGCGCCa -3'
miRNA:   3'- -GCGGaga--UGC-CCU---UGGUGUU------------GUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 102637 0.66 0.956507
Target:  5'- gCGCgCUCgagGCGGcGcucgaGGCCGCc-CACGCCa -3'
miRNA:   3'- -GCG-GAGa--UGCC-C-----UUGGUGuuGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 111765 0.66 0.952581
Target:  5'- gGCCcagCUGCGauGAGgCGCAGCACGUa -3'
miRNA:   3'- gCGGa--GAUGCc-CUUgGUGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 82986 0.66 0.952581
Target:  5'- gCGCgUCUGCGcc-GCCACGGC-CGCg -3'
miRNA:   3'- -GCGgAGAUGCccuUGGUGUUGuGCGg -5'
29379 3' -54.5 NC_006151.1 + 70108 0.66 0.948423
Target:  5'- gGCgCga-GCGGGu-CCACGcccGCGCGCCg -3'
miRNA:   3'- gCG-GagaUGCCCuuGGUGU---UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 44169 0.66 0.948423
Target:  5'- uGCCcCU--GGGAgcACCGCGGguCGCCg -3'
miRNA:   3'- gCGGaGAugCCCU--UGGUGUUguGCGG- -5'
29379 3' -54.5 NC_006151.1 + 76895 0.66 0.948423
Target:  5'- cCGCCUgCUgcgccggcgagaGCGGcauccggucccGGGCCACGuucCGCGCCa -3'
miRNA:   3'- -GCGGA-GA------------UGCC-----------CUUGGUGUu--GUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 116850 0.66 0.948423
Target:  5'- -uUCUCggcgGCGGGGaagGCCGCGuCGuCGCCg -3'
miRNA:   3'- gcGGAGa---UGCCCU---UGGUGUuGU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 131550 0.66 0.948423
Target:  5'- gCGCCU---CGGGcGCCGC-ACGgGCCc -3'
miRNA:   3'- -GCGGAgauGCCCuUGGUGuUGUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 86536 0.66 0.948423
Target:  5'- aCGCCUCgccCGa-GGCCGcCGugGCGCCg -3'
miRNA:   3'- -GCGGAGau-GCccUUGGU-GUugUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 98404 0.66 0.948423
Target:  5'- gCGCCUacgucgagACGGGcACCuGCGAgGCgGCCg -3'
miRNA:   3'- -GCGGAga------UGCCCuUGG-UGUUgUG-CGG- -5'
29379 3' -54.5 NC_006151.1 + 85310 0.66 0.950114
Target:  5'- aGCagCUCcACGGGcgcuacgcgcuggagGGCCACAGCGugcuCGCCg -3'
miRNA:   3'- gCG--GAGaUGCCC---------------UUGGUGUUGU----GCGG- -5'
29379 3' -54.5 NC_006151.1 + 127468 0.66 0.952581
Target:  5'- gCGCUgggCggcGCGGaacGAGCCGCGGacccCGCGCCg -3'
miRNA:   3'- -GCGGa--Ga--UGCC---CUUGGUGUU----GUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 4267 0.66 0.952581
Target:  5'- gGCgCUCga-GGacGCCGCGGCAgGCCa -3'
miRNA:   3'- gCG-GAGaugCCcuUGGUGUUGUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 4999 0.66 0.952581
Target:  5'- gCGCUUCcugcGCGGGGGCCG-GGCGgGCUc -3'
miRNA:   3'- -GCGGAGa---UGCCCUUGGUgUUGUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 15153 0.66 0.952581
Target:  5'- cCGCCgacgugACGGGcgaCACG-CGCGCCc -3'
miRNA:   3'- -GCGGaga---UGCCCuugGUGUuGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 75105 0.66 0.952581
Target:  5'- gGCgUUgcCGGGcGCCAgCAGCugGUCg -3'
miRNA:   3'- gCGgAGauGCCCuUGGU-GUUGugCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.