miRNA display CGI


Results 21 - 40 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 11352 0.69 0.833449
Target:  5'- cCGCC-C-GCGGGcGCUACcGCGCGCUc -3'
miRNA:   3'- -GCGGaGaUGCCCuUGGUGuUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 11685 0.67 0.929422
Target:  5'- gCGCC-CgACGGG-GCCGCGGgACGgCg -3'
miRNA:   3'- -GCGGaGaUGCCCuUGGUGUUgUGCgG- -5'
29379 3' -54.5 NC_006151.1 + 13187 0.76 0.471209
Target:  5'- gGCCgUCU-CGGGGcCCGCGGCGcCGCCa -3'
miRNA:   3'- gCGG-AGAuGCCCUuGGUGUUGU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 13429 0.66 0.939401
Target:  5'- cCGCgUCccCGGGGcCCGCA-UugGCCg -3'
miRNA:   3'- -GCGgAGauGCCCUuGGUGUuGugCGG- -5'
29379 3' -54.5 NC_006151.1 + 14106 0.69 0.840884
Target:  5'- aCGCCg--ACGGGGAUCgaccgggagaggcGCGgaGCGCGCCc -3'
miRNA:   3'- -GCGGagaUGCCCUUGG-------------UGU--UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 14149 0.67 0.912645
Target:  5'- aGCCg--ACGaGGAGCCGCGccccgcucgaGgACGCCc -3'
miRNA:   3'- gCGGagaUGC-CCUUGGUGU----------UgUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 15066 0.68 0.872717
Target:  5'- gCGCCuUCUGCGcggcccccuGGcGCCcCGACACGCg -3'
miRNA:   3'- -GCGG-AGAUGC---------CCuUGGuGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 15103 0.68 0.865275
Target:  5'- gCGCCUCggggccgACGuGAACCGCcucuuucgcGGCAuCGCCg -3'
miRNA:   3'- -GCGGAGa------UGCcCUUGGUG---------UUGU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 15153 0.66 0.952581
Target:  5'- cCGCCgacgugACGGGcgaCACG-CGCGCCc -3'
miRNA:   3'- -GCGGaga---UGCCCuugGUGUuGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 18151 0.66 0.94403
Target:  5'- uGUCg--GCGGGGGCgGCGGCGgGCa -3'
miRNA:   3'- gCGGagaUGCCCUUGgUGUUGUgCGg -5'
29379 3' -54.5 NC_006151.1 + 18568 0.77 0.425381
Target:  5'- cCGCC-CggcgGCGGGAG-CACAGCACGCa -3'
miRNA:   3'- -GCGGaGa---UGCCCUUgGUGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 18676 0.7 0.807617
Target:  5'- gGCCg-UACGGGuuCCACGgGCGCGCg -3'
miRNA:   3'- gCGGagAUGCCCuuGGUGU-UGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 20540 0.82 0.240766
Target:  5'- gCGuCCUCgGCGGGGuCCACGACGCGCa -3'
miRNA:   3'- -GC-GGAGaUGCCCUuGGUGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 20757 0.67 0.924071
Target:  5'- gCGCCUCcaccGCGGcGGAC----GCGCGCCg -3'
miRNA:   3'- -GCGGAGa---UGCC-CUUGguguUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 21100 0.7 0.789578
Target:  5'- aGCC-CcGCGGGGAgccgggUCACGucGCGCGCCa -3'
miRNA:   3'- gCGGaGaUGCCCUU------GGUGU--UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 21327 0.68 0.900263
Target:  5'- aCGCCcggCgcgGCGGGGGuCCGCGGCugGa- -3'
miRNA:   3'- -GCGGa--Ga--UGCCCUU-GGUGUUGugCgg -5'
29379 3' -54.5 NC_006151.1 + 23149 0.67 0.924071
Target:  5'- gGcCCUCgGCGGGAGCgGCGGgAgaGCCc -3'
miRNA:   3'- gC-GGAGaUGCCCUUGgUGUUgUg-CGG- -5'
29379 3' -54.5 NC_006151.1 + 23244 0.69 0.84976
Target:  5'- uCGCC-CU-CGGGGGCCuCGgggGCAuCGCCg -3'
miRNA:   3'- -GCGGaGAuGCCCUUGGuGU---UGU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 23974 0.67 0.906573
Target:  5'- gGCCUCUcuggccacgACGGugcGGACCACGAgGaGCCc -3'
miRNA:   3'- gCGGAGA---------UGCC---CUUGGUGUUgUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 24878 0.71 0.761469
Target:  5'- cCGCCUCgcccggcCGGcGGGCCACGaagACGCgGCCc -3'
miRNA:   3'- -GCGGAGau-----GCC-CUUGGUGU---UGUG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.