miRNA display CGI


Results 21 - 40 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 136962 0.67 0.906573
Target:  5'- gCGCCgcCUGCuGGAgcugGCCGC--CGCGCCg -3'
miRNA:   3'- -GCGGa-GAUGcCCU----UGGUGuuGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 136913 0.67 0.906573
Target:  5'- gCGCCcCcgACGaGGAGCagcaGCAGCcggGCGCCg -3'
miRNA:   3'- -GCGGaGa-UGC-CCUUGg---UGUUG---UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 136825 0.71 0.751856
Target:  5'- gCGCCgc-GCGGGcuCUGCGACGCgGCCg -3'
miRNA:   3'- -GCGGagaUGCCCuuGGUGUUGUG-CGG- -5'
29379 3' -54.5 NC_006151.1 + 136778 0.73 0.610293
Target:  5'- gCGCCggCUACGuGGAggACCGCAcguACGCCg -3'
miRNA:   3'- -GCGGa-GAUGC-CCU--UGGUGUug-UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 136683 0.72 0.686177
Target:  5'- cCGCCUUcuuccgccacgUGCGGGcgcagcucaacauCCGCGACACGUCg -3'
miRNA:   3'- -GCGGAG-----------AUGCCCuu-----------GGUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 136403 0.67 0.918478
Target:  5'- uGCCUgagcggCUacgcGCGGGGccCCGCGgcggcGCACGCCg -3'
miRNA:   3'- gCGGA------GA----UGCCCUu-GGUGU-----UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 136174 1.11 0.002969
Target:  5'- gCGCCUCUACGGGAACCACAACACGCCc -3'
miRNA:   3'- -GCGGAGAUGCCCUUGGUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 135930 0.7 0.789578
Target:  5'- gCGCgCUCUGCcgcgGGGAGCCccucGCGGCGCGg- -3'
miRNA:   3'- -GCG-GAGAUG----CCCUUGG----UGUUGUGCgg -5'
29379 3' -54.5 NC_006151.1 + 135076 0.7 0.780339
Target:  5'- cCGCCUCcucggGCGGGGGCgGCG--GgGCCg -3'
miRNA:   3'- -GCGGAGa----UGCCCUUGgUGUugUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 134781 0.69 0.824159
Target:  5'- uCGgCUCcACGGGccugugaGGCCGCGGCggcccGCGCCg -3'
miRNA:   3'- -GCgGAGaUGCCC-------UUGGUGUUG-----UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 134728 0.71 0.751856
Target:  5'- gGCCUUcGCGcGGGACUuugucgccccgaGCAGCGCGCg -3'
miRNA:   3'- gCGGAGaUGC-CCUUGG------------UGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 134655 0.68 0.896365
Target:  5'- cCGCUgggCUggaucACGGGAcgguccccguuccccGCCACcccGCGCGCCc -3'
miRNA:   3'- -GCGGa--GA-----UGCCCU---------------UGGUGu--UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 134570 0.7 0.780339
Target:  5'- cCGCUUC--CGGauccaGAACCGCGGCGCGCa -3'
miRNA:   3'- -GCGGAGauGCC-----CUUGGUGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 134324 0.69 0.825013
Target:  5'- gCGCCUCgcgcCGGGcaucGCCACgGACGUGCCc -3'
miRNA:   3'- -GCGGAGau--GCCCu---UGGUG-UUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 134004 0.69 0.825013
Target:  5'- aGC----GCGGGGGCCAcCAGCGCGCa -3'
miRNA:   3'- gCGgagaUGCCCUUGGU-GUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 132832 0.66 0.94403
Target:  5'- cCGCC-C-GCGGGAcgGCCACcACGgGCg -3'
miRNA:   3'- -GCGGaGaUGCCCU--UGGUGuUGUgCGg -5'
29379 3' -54.5 NC_006151.1 + 132635 0.66 0.94403
Target:  5'- cCGCCgUCgGCGcccGGACCugGGC-CGCCa -3'
miRNA:   3'- -GCGG-AGaUGCc--CUUGGugUUGuGCGG- -5'
29379 3' -54.5 NC_006151.1 + 132405 0.68 0.886944
Target:  5'- gCGCaccagCUGCcGGAGCUugcccucgucGCGGCGCGCCu -3'
miRNA:   3'- -GCGga---GAUGcCCUUGG----------UGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 131925 0.73 0.620566
Target:  5'- gGCCUCcGCGGugcuGCCGUAGCugGCCa -3'
miRNA:   3'- gCGGAGaUGCCcu--UGGUGUUGugCGG- -5'
29379 3' -54.5 NC_006151.1 + 131781 0.7 0.78866
Target:  5'- gGCC---GCGGGcGCCGCcgucgucAGCGCGCCa -3'
miRNA:   3'- gCGGagaUGCCCuUGGUG-------UUGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.