miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 142985 0.66 0.956124
Target:  5'- uGCC---GCGGGugggcccGACCGCAGCAuCGCg -3'
miRNA:   3'- gCGGagaUGCCC-------UUGGUGUUGU-GCGg -5'
29379 3' -54.5 NC_006151.1 + 142314 0.69 0.857621
Target:  5'- gCGCCg-UAUGGGGGCC-CG-CGCGCUc -3'
miRNA:   3'- -GCGGagAUGCCCUUGGuGUuGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 141841 0.69 0.841701
Target:  5'- cCGCgCUCgacGCGaGGGGCuCGCGcCGCGCCc -3'
miRNA:   3'- -GCG-GAGa--UGC-CCUUG-GUGUuGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 141619 0.67 0.924071
Target:  5'- uGCCgggaUCggGCGGGucgcuGCCGCGGCgGCGCg -3'
miRNA:   3'- gCGG----AGa-UGCCCu----UGGUGUUG-UGCGg -5'
29379 3' -54.5 NC_006151.1 + 141511 0.7 0.780339
Target:  5'- gCGUCUCcACGGGGGCCgagGCGACggACGUg -3'
miRNA:   3'- -GCGGAGaUGCCCUUGG---UGUUG--UGCGg -5'
29379 3' -54.5 NC_006151.1 + 140455 0.74 0.587761
Target:  5'- uGCCUCgGCGGGAucauggacgcgcuggACUcccacaaaaccggcuGCGACGCGCCc -3'
miRNA:   3'- gCGGAGaUGCCCU---------------UGG---------------UGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 140304 0.66 0.934532
Target:  5'- gCGCCgcCUGCGGGacGugCGCuGCAuCGUCa -3'
miRNA:   3'- -GCGGa-GAUGCCC--UugGUGuUGU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 140249 0.68 0.871246
Target:  5'- gGCCguucCUGCGcugcuaccuCCGCGACACGCCc -3'
miRNA:   3'- gCGGa---GAUGCccuu-----GGUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 140034 0.66 0.956507
Target:  5'- cCGCCUgUuuGaGGuGCgGCcGCACGCCa -3'
miRNA:   3'- -GCGGAgAugC-CCuUGgUGuUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 139758 0.7 0.807617
Target:  5'- uCGUCcggACGGcGGGCC-CGACGCGCCc -3'
miRNA:   3'- -GCGGagaUGCC-CUUGGuGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 139642 0.79 0.350016
Target:  5'- gCGCCggcGCGGGggUCGCGgcggGCGCGCCg -3'
miRNA:   3'- -GCGGagaUGCCCuuGGUGU----UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 139244 0.66 0.934532
Target:  5'- gCGUCUCcgGCGcGAcgGCCACGcccGCGCGCUc -3'
miRNA:   3'- -GCGGAGa-UGCcCU--UGGUGU---UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 139086 0.69 0.857621
Target:  5'- cCGCCU----GGGGGCgCGCAugGCGCUg -3'
miRNA:   3'- -GCGGAgaugCCCUUG-GUGUugUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 138959 0.7 0.780339
Target:  5'- uCGCCUgguacAUGGccGAGCuCGCGACGCGCCg -3'
miRNA:   3'- -GCGGAga---UGCC--CUUG-GUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 138720 0.67 0.922971
Target:  5'- gCGCCgcgcGCGGGucguguacgcgcGCCGCGACugccGCGCCu -3'
miRNA:   3'- -GCGGaga-UGCCCu-----------UGGUGUUG----UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 138612 0.69 0.833449
Target:  5'- uGCCgCUcgGCGaGGAcGCCGCcgggGGCGCGCCg -3'
miRNA:   3'- gCGGaGA--UGC-CCU-UGGUG----UUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 138195 0.68 0.879942
Target:  5'- gCGCCcgugCUGCGGc-ACCuCGACGCGCa -3'
miRNA:   3'- -GCGGa---GAUGCCcuUGGuGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 138054 0.67 0.924617
Target:  5'- aGCUUCUucgagcgcaaggcgGCGcGGAACCGCgagGccuucuucgcccggcGCACGCCg -3'
miRNA:   3'- gCGGAGA--------------UGC-CCUUGGUG---U---------------UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 137693 0.69 0.84976
Target:  5'- gCGCCaagAUGGGcuuCCGCGuguGCACGCCc -3'
miRNA:   3'- -GCGGagaUGCCCuu-GGUGU---UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 137467 0.7 0.798673
Target:  5'- gGCCUCgaggagGCGcccuGGGACgACGACGcCGCCc -3'
miRNA:   3'- gCGGAGa-----UGC----CCUUGgUGUUGU-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.