miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 664 0.73 0.641131
Target:  5'- gGCCgggGCGGGcuCCGCGgaucgcaucgGCGCGCCg -3'
miRNA:   3'- gCGGagaUGCCCuuGGUGU----------UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 1837 0.66 0.94403
Target:  5'- cCGCCgggCcgaGGGGACCGaGGC-CGCCg -3'
miRNA:   3'- -GCGGa--GaugCCCUUGGUgUUGuGCGG- -5'
29379 3' -54.5 NC_006151.1 + 2281 0.67 0.905953
Target:  5'- gGCCg--GCGGGGcgcCCGCGGCggcgacgGCGCCc -3'
miRNA:   3'- gCGGagaUGCCCUu--GGUGUUG-------UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 2335 0.67 0.912645
Target:  5'- gGCCUCggcguCGGGcuCCAgCAGCGcCGCg -3'
miRNA:   3'- gCGGAGau---GCCCuuGGU-GUUGU-GCGg -5'
29379 3' -54.5 NC_006151.1 + 3251 0.7 0.798673
Target:  5'- gGCggCggaGCGGGGcGCCGCGGCGCGCg -3'
miRNA:   3'- gCGgaGa--UGCCCU-UGGUGUUGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 3395 0.67 0.906573
Target:  5'- cCGCCU---CGGaGGGCCGCGGCGugugggucuCGCCg -3'
miRNA:   3'- -GCGGAgauGCC-CUUGGUGUUGU---------GCGG- -5'
29379 3' -54.5 NC_006151.1 + 4043 0.66 0.934532
Target:  5'- gGCCUC-GCGGGcgcgGGCCcCGucCACGCUg -3'
miRNA:   3'- gCGGAGaUGCCC----UUGGuGUu-GUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 4267 0.66 0.952581
Target:  5'- gGCgCUCga-GGacGCCGCGGCAgGCCa -3'
miRNA:   3'- gCG-GAGaugCCcuUGGUGUUGUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 4384 0.79 0.350016
Target:  5'- uCGCCUCcccggcGCGGGGGuCCGCGGCGCgGCCc -3'
miRNA:   3'- -GCGGAGa-----UGCCCUU-GGUGUUGUG-CGG- -5'
29379 3' -54.5 NC_006151.1 + 4845 0.71 0.751856
Target:  5'- aGCCcCUcGCGGGAGuCCcCGGCGcCGCCg -3'
miRNA:   3'- gCGGaGA-UGCCCUU-GGuGUUGU-GCGG- -5'
29379 3' -54.5 NC_006151.1 + 4999 0.66 0.952581
Target:  5'- gCGCUUCcugcGCGGGGGCCG-GGCGgGCUc -3'
miRNA:   3'- -GCGGAGa---UGCCCUUGGUgUUGUgCGG- -5'
29379 3' -54.5 NC_006151.1 + 5074 0.73 0.630848
Target:  5'- gGCCgagggCcGCGGG-GCCGCGGCggGCGCCg -3'
miRNA:   3'- gCGGa----GaUGCCCuUGGUGUUG--UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 5307 0.66 0.941281
Target:  5'- uGCCgcugCUGCuGGAgcugcugaagccgcgGCCGCGGCggaggGCGCCc -3'
miRNA:   3'- gCGGa---GAUGcCCU---------------UGGUGUUG-----UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 5381 0.69 0.840884
Target:  5'- uGUCUCUGCGGGGgcgccccGCCGucccCGGCGagGCCg -3'
miRNA:   3'- gCGGAGAUGCCCU-------UGGU----GUUGUg-CGG- -5'
29379 3' -54.5 NC_006151.1 + 5695 0.71 0.742136
Target:  5'- uGCCggcgCUGCGGccACCGCuGCugGCUg -3'
miRNA:   3'- gCGGa---GAUGCCcuUGGUGuUGugCGG- -5'
29379 3' -54.5 NC_006151.1 + 6230 0.66 0.934532
Target:  5'- aGCCgcggCgcCGGGAGCCcugGCuGC-CGCCg -3'
miRNA:   3'- gCGGa---GauGCCCUUGG---UGuUGuGCGG- -5'
29379 3' -54.5 NC_006151.1 + 6366 0.66 0.938925
Target:  5'- gGUCUCgauCGGGGucuuucuGCCugAGCgaggccggGCGCCg -3'
miRNA:   3'- gCGGAGau-GCCCU-------UGGugUUG--------UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 7101 0.79 0.327095
Target:  5'- gGCCcgcUCUGCGGccaucuuGGCCGCGGCGCGCCa -3'
miRNA:   3'- gCGG---AGAUGCCc------UUGGUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 8232 0.68 0.886944
Target:  5'- -cCCUUcccgGCGGGGaggGCCGggcCGGCGCGCCg -3'
miRNA:   3'- gcGGAGa---UGCCCU---UGGU---GUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 10657 0.7 0.789578
Target:  5'- cCGCCcaggCgGCGGGGgaGCgCGgAGCGCGCCg -3'
miRNA:   3'- -GCGGa---GaUGCCCU--UG-GUgUUGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.