miRNA display CGI


Results 21 - 40 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 3' -54.5 NC_006151.1 + 31613 0.75 0.529292
Target:  5'- cCGCCUggGCGGGGauGCCGCGccggcacgagcGCACGCg -3'
miRNA:   3'- -GCGGAgaUGCCCU--UGGUGU-----------UGUGCGg -5'
29379 3' -54.5 NC_006151.1 + 100127 0.75 0.509605
Target:  5'- gCGCCUUccuCGGGGACCuGCuggcACGCGCCc -3'
miRNA:   3'- -GCGGAGau-GCCCUUGG-UGu---UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 118813 0.74 0.569438
Target:  5'- gGCCUUcgACGaGAACCACGAgaGCGCCg -3'
miRNA:   3'- gCGGAGa-UGCcCUUGGUGUUg-UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 99459 0.74 0.600036
Target:  5'- -cCCUCUACGGGGACgugACGGCgGCGCUg -3'
miRNA:   3'- gcGGAGAUGCCCUUGg--UGUUG-UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 66536 0.74 0.569438
Target:  5'- cCGCgCUCUuCGGGGGCgCGCGcggcCGCGCCg -3'
miRNA:   3'- -GCG-GAGAuGCCCUUG-GUGUu---GUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 59669 0.74 0.569438
Target:  5'- gCGCCU---CGGGGACgCGCGcgcACGCGCCg -3'
miRNA:   3'- -GCGGAgauGCCCUUG-GUGU---UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 119670 0.74 0.600036
Target:  5'- aCGCCUCgUACGGGGcCCuCAA-GCGCCc -3'
miRNA:   3'- -GCGGAG-AUGCCCUuGGuGUUgUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 140455 0.74 0.587761
Target:  5'- uGCCUCgGCGGGAucauggacgcgcuggACUcccacaaaaccggcuGCGACGCGCCc -3'
miRNA:   3'- gCGGAGaUGCCCU---------------UGG---------------UGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 53940 0.74 0.579602
Target:  5'- cCGCCgcgGCGaGGGACUugAAcCACGCCa -3'
miRNA:   3'- -GCGGagaUGC-CCUUGGugUU-GUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 32052 0.74 0.589804
Target:  5'- cCGCCUCUGCaGccGCCGCc-CGCGCCg -3'
miRNA:   3'- -GCGGAGAUGcCcuUGGUGuuGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 99385 0.74 0.600036
Target:  5'- cCGCCUCcucgacgacUACGGGcccgggcugGACUACGuGCGCGCCu -3'
miRNA:   3'- -GCGGAG---------AUGCCC---------UUGGUGU-UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 83873 0.74 0.599012
Target:  5'- gCGCUUCcggGCGGGGauccgcuGCCACAAC-CGCUu -3'
miRNA:   3'- -GCGGAGa--UGCCCU-------UGGUGUUGuGCGG- -5'
29379 3' -54.5 NC_006151.1 + 119064 0.74 0.587761
Target:  5'- cCGCCUCcGCGGGcgcgcccgucucgcaGGCCGCGGCGCucggcgcguacgugaGCCg -3'
miRNA:   3'- -GCGGAGaUGCCC---------------UUGGUGUUGUG---------------CGG- -5'
29379 3' -54.5 NC_006151.1 + 67057 0.74 0.600036
Target:  5'- cCGCCUacCUGCuGGcGGCCuuCGACACGCCg -3'
miRNA:   3'- -GCGGA--GAUGcCC-UUGGu-GUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 69711 0.73 0.641131
Target:  5'- cCGCCgc--CGGGGGCaGCAGCGCGUCg -3'
miRNA:   3'- -GCGGagauGCCCUUGgUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 53979 0.73 0.651407
Target:  5'- gCGCCUCcGCGGGcgUCGCGgcgagcucccggACGCGCUc -3'
miRNA:   3'- -GCGGAGaUGCCCuuGGUGU------------UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 664 0.73 0.641131
Target:  5'- gGCCgggGCGGGcuCCGCGgaucgcaucgGCGCGCCg -3'
miRNA:   3'- gCGGagaUGCCCuuGGUGU----------UGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 99325 0.73 0.661667
Target:  5'- cCGCCUg-ACGG--ACgCGCAGCGCGCCg -3'
miRNA:   3'- -GCGGAgaUGCCcuUG-GUGUUGUGCGG- -5'
29379 3' -54.5 NC_006151.1 + 30246 0.73 0.661667
Target:  5'- gCGCCg--GCGGGAGagACGACggGCGCCa -3'
miRNA:   3'- -GCGGagaUGCCCUUggUGUUG--UGCGG- -5'
29379 3' -54.5 NC_006151.1 + 97282 0.73 0.62982
Target:  5'- gCGCCUCggcgGCGGGcguguugAGCCggcccgucggGCAGCGCGCg -3'
miRNA:   3'- -GCGGAGa---UGCCC-------UUGG----------UGUUGUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.