Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29379 | 5' | -62.3 | NC_006151.1 | + | 114240 | 0.69 | 0.39654 |
Target: 5'- gGUGGcCGCGCgggaccccucggagCGcGCCCuCGAGGAGGu -3' miRNA: 3'- -CACC-GCGCGaa------------GC-CGGG-GCUCCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 84724 | 0.69 | 0.412459 |
Target: 5'- cGUGGCcgagGCGCUcgUGGUgCUCGAGGAGAc -3' miRNA: 3'- -CACCG----CGCGAa-GCCG-GGGCUCCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 105532 | 0.69 | 0.412459 |
Target: 5'- -cGGCGCGCaUCGGgCCCGAGc---- -3' miRNA: 3'- caCCGCGCGaAGCCgGGGCUCcucuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 84756 | 0.69 | 0.420994 |
Target: 5'- -cGGCGCGC----GCCgCCGAGGAGGc -3' miRNA: 3'- caCCGCGCGaagcCGG-GGCUCCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 84783 | 0.69 | 0.420994 |
Target: 5'- -cGGCGCGC----GCCgCCGAGGAGGc -3' miRNA: 3'- caCCGCGCGaagcCGG-GGCUCCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 142572 | 0.69 | 0.429635 |
Target: 5'- -aGGCGCGCUcuccucucCGGUCCCGGcGGGGc- -3' miRNA: 3'- caCCGCGCGAa-------GCCGGGGCU-CCUCuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 48969 | 0.69 | 0.429635 |
Target: 5'- cUGGaCGCGCcucaCGGCgCCCGAGGAc-- -3' miRNA: 3'- cACC-GCGCGaa--GCCG-GGGCUCCUcuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 75892 | 0.69 | 0.429635 |
Target: 5'- --uGCGCGCgaCGGCCaCCGAGGGc-- -3' miRNA: 3'- cacCGCGCGaaGCCGG-GGCUCCUcuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 75546 | 0.7 | 0.333278 |
Target: 5'- cGUGGCcugguacacGCGCUUCucgagGGCCUCGAGGAa-- -3' miRNA: 3'- -CACCG---------CGCGAAG-----CCGGGGCUCCUcuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 114927 | 0.7 | 0.333278 |
Target: 5'- -cGGCGuCGCgcUCGGCCuCCGGGGuGGg -3' miRNA: 3'- caCCGC-GCGa-AGCCGG-GGCUCCuCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 105040 | 0.7 | 0.333278 |
Target: 5'- -cGGCGCuGCUgcUCGGCgCCguCGAGGAGGc -3' miRNA: 3'- caCCGCG-CGA--AGCCG-GG--GCUCCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 67747 | 0.7 | 0.348188 |
Target: 5'- -cGGCGCGg--CGGCCCCGucGGGGu -3' miRNA: 3'- caCCGCGCgaaGCCGGGGCucCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 102272 | 0.7 | 0.35582 |
Target: 5'- -gGGCGCGCUgccggagcgCGGCCCgGccGGGGAc -3' miRNA: 3'- caCCGCGCGAa--------GCCGGGgCu-CCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 130269 | 0.71 | 0.30488 |
Target: 5'- -cGGCGCGC---GGCCCCGAGGccgcGGGc -3' miRNA: 3'- caCCGCGCGaagCCGGGGCUCC----UCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 129328 | 0.71 | 0.311802 |
Target: 5'- -aGGCGgGUUagCGGCCCCGGGGcGGc -3' miRNA: 3'- caCCGCgCGAa-GCCGGGGCUCCuCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 8017 | 0.71 | 0.318842 |
Target: 5'- -gGGCGCGagaccggcUCGGCCUCGucGGGAGAGa -3' miRNA: 3'- caCCGCGCga------AGCCGGGGC--UCCUCUU- -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 99687 | 0.71 | 0.318842 |
Target: 5'- --uGCGCGCcgaCGGCgCCGGGGAGAc -3' miRNA: 3'- cacCGCGCGaa-GCCGgGGCUCCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 104824 | 0.71 | 0.326001 |
Target: 5'- -cGGCGCGCgaCGGCCUCGccgcggcGGAGGc -3' miRNA: 3'- caCCGCGCGaaGCCGGGGCu------CCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 72706 | 0.72 | 0.272044 |
Target: 5'- -aGGUacugcgcaaaGUGCUccUCGGCCCCGAGGGGc- -3' miRNA: 3'- caCCG----------CGCGA--AGCCGGGGCUCCUCuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 105285 | 0.72 | 0.253741 |
Target: 5'- -gGGCGCGCgcgCGGCCgcgccggcgccuCCGAGGAcGAGg -3' miRNA: 3'- caCCGCGCGaa-GCCGG------------GGCUCCU-CUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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