miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 5' -62.3 NC_006151.1 + 4138 0.66 0.579739
Target:  5'- -cGGcCGgGC--CGGCCCCGGGGAu-- -3'
miRNA:   3'- caCC-GCgCGaaGCCGGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 103169 0.66 0.576774
Target:  5'- cUGGCGCGCUUCGacgccauggacgccGCCCUGGcggccgccccGGAcGAGg -3'
miRNA:   3'- cACCGCGCGAAGC--------------CGGGGCU----------CCU-CUU- -5'
29379 5' -62.3 NC_006151.1 + 82675 0.66 0.576774
Target:  5'- -cGGCGCGCcgcgggcgagggcggCGGCCCCcgcGAGGgccAGGAg -3'
miRNA:   3'- caCCGCGCGaa-------------GCCGGGG---CUCC---UCUU- -5'
29379 5' -62.3 NC_006151.1 + 75452 0.66 0.573812
Target:  5'- cGUGGCGCGCguagcggUCGGCggccggcuugaagacCCCcAGGGGc- -3'
miRNA:   3'- -CACCGCGCGa------AGCCG---------------GGGcUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 32354 0.66 0.56004
Target:  5'- -aGGCGCcgggGCUUucuuccCGGaCCgCCGGGGAGGAa -3'
miRNA:   3'- caCCGCG----CGAA------GCC-GG-GGCUCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 34014 0.66 0.554165
Target:  5'- -cGGCGCGC--CGGCCCgGcccuccccgccgggaAGGGGAc -3'
miRNA:   3'- caCCGCGCGaaGCCGGGgC---------------UCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 17407 0.66 0.600576
Target:  5'- cGUGGCGCGCggcagcagggccagCGaGCCgggggcgaucuCCGAGGAGc- -3'
miRNA:   3'- -CACCGCGCGaa------------GC-CGG-----------GGCUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 127839 0.66 0.550259
Target:  5'- cGUGGCgGCGUcgCGGCugcgCCgGAGGGGGc -3'
miRNA:   3'- -CACCG-CGCGaaGCCG----GGgCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 123514 0.66 0.550259
Target:  5'- cUGGCGCGCUUCaugguGGCCCgCGAuuGGuGc- -3'
miRNA:   3'- cACCGCGCGAAG-----CCGGG-GCU--CCuCuu -5'
29379 5' -62.3 NC_006151.1 + 103805 0.66 0.550259
Target:  5'- -aGGcCGCGCUgucggCGGCCguggcggcggCCGuGGAGAu -3'
miRNA:   3'- caCC-GCGCGAa----GCCGG----------GGCuCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 96809 0.67 0.544415
Target:  5'- -gGGCGCGCgggcuuuuagcggCGGgCCCGccaauGGGGGAAa -3'
miRNA:   3'- caCCGCGCGaa-----------GCCgGGGC-----UCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 141769 0.67 0.540531
Target:  5'- gGUGGCGuCGCcggUUCuGUCCCGGGGAc-- -3'
miRNA:   3'- -CACCGC-GCG---AAGcCGGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 73736 0.67 0.540531
Target:  5'- cGUGGCGUaGUagUUGGCCCCGAGaaaguGGGGc -3'
miRNA:   3'- -CACCGCG-CGa-AGCCGGGGCUC-----CUCUu -5'
29379 5' -62.3 NC_006151.1 + 60713 0.67 0.540531
Target:  5'- -cGcCGCGaCcUCGGCCCCGAGGugccGGAGc -3'
miRNA:   3'- caCcGCGC-GaAGCCGGGGCUCC----UCUU- -5'
29379 5' -62.3 NC_006151.1 + 138019 0.67 0.521255
Target:  5'- -cGcGCGUGCUgcaCaGCCUCGGGGGGGAg -3'
miRNA:   3'- caC-CGCGCGAa--GcCGGGGCUCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 76664 0.67 0.511718
Target:  5'- -gGGCGCGUgugcgCGGUCgCUGGGGAGc- -3'
miRNA:   3'- caCCGCGCGaa---GCCGG-GGCUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 2601 0.67 0.511718
Target:  5'- -aGGCGCGCggCGGCagcgggaCCGGGGuccGGGg -3'
miRNA:   3'- caCCGCGCGaaGCCGg------GGCUCC---UCUu -5'
29379 5' -62.3 NC_006151.1 + 27151 0.67 0.511718
Target:  5'- -aGGCG-GUUcacgUCGGCCCCGAGGc--- -3'
miRNA:   3'- caCCGCgCGA----AGCCGGGGCUCCucuu -5'
29379 5' -62.3 NC_006151.1 + 14130 0.67 0.511718
Target:  5'- -aGGCGCGgagCGcGCCCCGAGccgacGAGGAg -3'
miRNA:   3'- caCCGCGCgaaGC-CGGGGCUC-----CUCUU- -5'
29379 5' -62.3 NC_006151.1 + 6158 0.67 0.502253
Target:  5'- -cGGCG-GCcUCGGCCUCGGcggcgucgucGGAGAAg -3'
miRNA:   3'- caCCGCgCGaAGCCGGGGCU----------CCUCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.