Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29379 | 5' | -62.3 | NC_006151.1 | + | 77521 | 0.74 | 0.208353 |
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Target: 5'- cUGGCGCGCcUCGgccgcgcgugggccGCCCCGcAGGGGAGc -3' miRNA: 3'- cACCGCGCGaAGC--------------CGGGGC-UCCUCUU- -5' |
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| 29379 | 5' | -62.3 | NC_006151.1 | + | 2681 | 0.74 | 0.199968 |
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Target: 5'- -aGGCGCaGCggcUCGGCCCCGGGGuGc- -3' miRNA: 3'- caCCGCG-CGa--AGCCGGGGCUCCuCuu -5' |
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| 29379 | 5' | -62.3 | NC_006151.1 | + | 6639 | 0.75 | 0.172686 |
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Target: 5'- aUGGagacCGCGCUUauaaGcGCCCCGAGGAGAGc -3' miRNA: 3'- cACC----GCGCGAAg---C-CGGGGCUCCUCUU- -5' |
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| 29379 | 5' | -62.3 | NC_006151.1 | + | 66881 | 0.76 | 0.152539 |
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Target: 5'- -gGGCGCGCc-CGGCCCCGcgccGGAGGAc -3' miRNA: 3'- caCCGCGCGaaGCCGGGGCu---CCUCUU- -5' |
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| 29379 | 5' | -62.3 | NC_006151.1 | + | 52179 | 0.77 | 0.13421 |
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Target: 5'- -gGGCGCGCgcgcgaacgCGGCCCCGAagagcucGGAGAGc -3' miRNA: 3'- caCCGCGCGaa-------GCCGGGGCU-------CCUCUU- -5' |
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| 29379 | 5' | -62.3 | NC_006151.1 | + | 54615 | 0.78 | 0.101655 |
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Target: 5'- -cGGUGCGCcgggCGcGCCCCGGGGGGAAg -3' miRNA: 3'- caCCGCGCGaa--GC-CGGGGCUCCUCUU- -5' |
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| 29379 | 5' | -62.3 | NC_006151.1 | + | 103911 | 0.81 | 0.06886 |
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Target: 5'- gGUGGCGCGCg-CGGCCgCCGuGGAGGAg -3' miRNA: 3'- -CACCGCGCGaaGCCGG-GGCuCCUCUU- -5' |
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| 29379 | 5' | -62.3 | NC_006151.1 | + | 136210 | 1.06 | 0.001061 |
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Target: 5'- cGUGGCGCGCUUCGGCCCCGAGGAGAAg -3' miRNA: 3'- -CACCGCGCGAAGCCGGGGCUCCUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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