miRNA display CGI


Results 41 - 60 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 5' -62.3 NC_006151.1 + 142572 0.69 0.429635
Target:  5'- -aGGCGCGCUcuccucucCGGUCCCGGcGGGGc- -3'
miRNA:   3'- caCCGCGCGAa-------GCCGGGGCU-CCUCuu -5'
29379 5' -62.3 NC_006151.1 + 84783 0.69 0.420994
Target:  5'- -cGGCGCGC----GCCgCCGAGGAGGc -3'
miRNA:   3'- caCCGCGCGaagcCGG-GGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 84756 0.69 0.420994
Target:  5'- -cGGCGCGC----GCCgCCGAGGAGGc -3'
miRNA:   3'- caCCGCGCGaagcCGG-GGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 105532 0.69 0.412459
Target:  5'- -cGGCGCGCaUCGGgCCCGAGc---- -3'
miRNA:   3'- caCCGCGCGaAGCCgGGGCUCcucuu -5'
29379 5' -62.3 NC_006151.1 + 84724 0.69 0.412459
Target:  5'- cGUGGCcgagGCGCUcgUGGUgCUCGAGGAGAc -3'
miRNA:   3'- -CACCG----CGCGAa-GCCG-GGGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 114240 0.69 0.39654
Target:  5'- gGUGGcCGCGCgggaccccucggagCGcGCCCuCGAGGAGGu -3'
miRNA:   3'- -CACC-GCGCGaa------------GC-CGGG-GCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 122325 0.69 0.395713
Target:  5'- -cGGUGCGCgu-GGaCCCCGAGGAc-- -3'
miRNA:   3'- caCCGCGCGaagCC-GGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 55452 0.69 0.387507
Target:  5'- -cGGCGcCGC--CGGCCCCGccGGGGGGc -3'
miRNA:   3'- caCCGC-GCGaaGCCGGGGC--UCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 102272 0.7 0.35582
Target:  5'- -gGGCGCGCUgccggagcgCGGCCCgGccGGGGAc -3'
miRNA:   3'- caCCGCGCGAa--------GCCGGGgCu-CCUCUu -5'
29379 5' -62.3 NC_006151.1 + 67747 0.7 0.348188
Target:  5'- -cGGCGCGg--CGGCCCCGucGGGGu -3'
miRNA:   3'- caCCGCGCgaaGCCGGGGCucCUCUu -5'
29379 5' -62.3 NC_006151.1 + 105040 0.7 0.333278
Target:  5'- -cGGCGCuGCUgcUCGGCgCCguCGAGGAGGc -3'
miRNA:   3'- caCCGCG-CGA--AGCCG-GG--GCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 114927 0.7 0.333278
Target:  5'- -cGGCGuCGCgcUCGGCCuCCGGGGuGGg -3'
miRNA:   3'- caCCGC-GCGa-AGCCGG-GGCUCCuCUu -5'
29379 5' -62.3 NC_006151.1 + 75546 0.7 0.333278
Target:  5'- cGUGGCcugguacacGCGCUUCucgagGGCCUCGAGGAa-- -3'
miRNA:   3'- -CACCG---------CGCGAAG-----CCGGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 104824 0.71 0.326001
Target:  5'- -cGGCGCGCgaCGGCCUCGccgcggcGGAGGc -3'
miRNA:   3'- caCCGCGCGaaGCCGGGGCu------CCUCUu -5'
29379 5' -62.3 NC_006151.1 + 99687 0.71 0.318842
Target:  5'- --uGCGCGCcgaCGGCgCCGGGGAGAc -3'
miRNA:   3'- cacCGCGCGaa-GCCGgGGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 8017 0.71 0.318842
Target:  5'- -gGGCGCGagaccggcUCGGCCUCGucGGGAGAGa -3'
miRNA:   3'- caCCGCGCga------AGCCGGGGC--UCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 129328 0.71 0.311802
Target:  5'- -aGGCGgGUUagCGGCCCCGGGGcGGc -3'
miRNA:   3'- caCCGCgCGAa-GCCGGGGCUCCuCUu -5'
29379 5' -62.3 NC_006151.1 + 130269 0.71 0.30488
Target:  5'- -cGGCGCGC---GGCCCCGAGGccgcGGGc -3'
miRNA:   3'- caCCGCGCGaagCCGGGGCUCC----UCUu -5'
29379 5' -62.3 NC_006151.1 + 72706 0.72 0.272044
Target:  5'- -aGGUacugcgcaaaGUGCUccUCGGCCCCGAGGGGc- -3'
miRNA:   3'- caCCG----------CGCGA--AGCCGGGGCUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 105285 0.72 0.253741
Target:  5'- -gGGCGCGCgcgCGGCCgcgccggcgccuCCGAGGAcGAGg -3'
miRNA:   3'- caCCGCGCGaa-GCCGG------------GGCUCCU-CUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.