miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 5' -62.3 NC_006151.1 + 60713 0.67 0.540531
Target:  5'- -cGcCGCGaCcUCGGCCCCGAGGugccGGAGc -3'
miRNA:   3'- caCcGCGC-GaAGCCGGGGCUCC----UCUU- -5'
29379 5' -62.3 NC_006151.1 + 73736 0.67 0.540531
Target:  5'- cGUGGCGUaGUagUUGGCCCCGAGaaaguGGGGc -3'
miRNA:   3'- -CACCGCG-CGa-AGCCGGGGCUC-----CUCUu -5'
29379 5' -62.3 NC_006151.1 + 141769 0.67 0.540531
Target:  5'- gGUGGCGuCGCcggUUCuGUCCCGGGGAc-- -3'
miRNA:   3'- -CACCGC-GCG---AAGcCGGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 138019 0.67 0.521255
Target:  5'- -cGcGCGUGCUgcaCaGCCUCGGGGGGGAg -3'
miRNA:   3'- caC-CGCGCGAa--GcCGGGGCUCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 76664 0.67 0.511718
Target:  5'- -gGGCGCGUgugcgCGGUCgCUGGGGAGc- -3'
miRNA:   3'- caCCGCGCGaa---GCCGG-GGCUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 2601 0.67 0.511718
Target:  5'- -aGGCGCGCggCGGCagcgggaCCGGGGuccGGGg -3'
miRNA:   3'- caCCGCGCGaaGCCGg------GGCUCC---UCUu -5'
29379 5' -62.3 NC_006151.1 + 27151 0.67 0.511718
Target:  5'- -aGGCG-GUUcacgUCGGCCCCGAGGc--- -3'
miRNA:   3'- caCCGCgCGA----AGCCGGGGCUCCucuu -5'
29379 5' -62.3 NC_006151.1 + 14130 0.67 0.511718
Target:  5'- -aGGCGCGgagCGcGCCCCGAGccgacGAGGAg -3'
miRNA:   3'- caCCGCGCgaaGC-CGGGGCUC-----CUCUU- -5'
29379 5' -62.3 NC_006151.1 + 19275 0.67 0.502253
Target:  5'- cGUGGCGCGCgg-GGCCcaCCGGGGc--- -3'
miRNA:   3'- -CACCGCGCGaagCCGG--GGCUCCucuu -5'
29379 5' -62.3 NC_006151.1 + 135925 0.67 0.502253
Target:  5'- cGUGcGCGCGC-UCuGCCgCGGGGAGc- -3'
miRNA:   3'- -CAC-CGCGCGaAGcCGGgGCUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 136648 0.67 0.502253
Target:  5'- cGUGGgGCGC-UCGcCCCuCGGGGAGc- -3'
miRNA:   3'- -CACCgCGCGaAGCcGGG-GCUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 6158 0.67 0.502253
Target:  5'- -cGGCG-GCcUCGGCCUCGGcggcgucgucGGAGAAg -3'
miRNA:   3'- caCCGCgCGaAGCCGGGGCU----------CCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 124852 0.67 0.501311
Target:  5'- -cGGCGCGUgugcagccUGGCCaaguggcgcgaggCCGAGGAGAu -3'
miRNA:   3'- caCCGCGCGaa------GCCGG-------------GGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 123752 0.67 0.492866
Target:  5'- uGUGGCggucuuugGCGCg--GGCCCCGGGGGc-- -3'
miRNA:   3'- -CACCG--------CGCGaagCCGGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 119113 0.68 0.47434
Target:  5'- cGUGaGcCGCGCggcCGGCCUCGuGGGGGc -3'
miRNA:   3'- -CAC-C-GCGCGaa-GCCGGGGCuCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 24519 0.68 0.47434
Target:  5'- -gGGCGCcgccacguugcaGCgcgCGGCCCCGAGGu--- -3'
miRNA:   3'- caCCGCG------------CGaa-GCCGGGGCUCCucuu -5'
29379 5' -62.3 NC_006151.1 + 102406 0.68 0.45617
Target:  5'- -cGGCGCGCgucgcgCGGCCCgCGAacGAGGc -3'
miRNA:   3'- caCCGCGCGaa----GCCGGG-GCUc-CUCUu -5'
29379 5' -62.3 NC_006151.1 + 142330 0.68 0.447226
Target:  5'- --cGCGCGCUcgCGGCgCCCGcuuuggaaGGGGGAAa -3'
miRNA:   3'- cacCGCGCGAa-GCCG-GGGC--------UCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 48969 0.69 0.429635
Target:  5'- cUGGaCGCGCcucaCGGCgCCCGAGGAc-- -3'
miRNA:   3'- cACC-GCGCGaa--GCCG-GGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 142572 0.69 0.429635
Target:  5'- -aGGCGCGCUcuccucucCGGUCCCGGcGGGGc- -3'
miRNA:   3'- caCCGCGCGAa-------GCCGGGGCU-CCUCuu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.