Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29379 | 5' | -62.3 | NC_006151.1 | + | 17407 | 0.66 | 0.600576 |
Target: 5'- cGUGGCGCGCggcagcagggccagCGaGCCgggggcgaucuCCGAGGAGc- -3' miRNA: 3'- -CACCGCGCGaa------------GC-CGG-----------GGCUCCUCuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 52371 | 0.66 | 0.599581 |
Target: 5'- -cGGCGCGCccccggGGCCCgCGGGGGc-- -3' miRNA: 3'- caCCGCGCGaag---CCGGG-GCUCCUcuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 8365 | 0.66 | 0.599581 |
Target: 5'- -aGGCGCGaggccccCGcCCCCGGGGGGGu -3' miRNA: 3'- caCCGCGCgaa----GCcGGGGCUCCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 133755 | 0.66 | 0.593617 |
Target: 5'- -gGGCGCGUgcggaUCGaucuuuauacgcgccGCCCCGcGGGGGAGg -3' miRNA: 3'- caCCGCGCGa----AGC---------------CGGGGC-UCCUCUU- -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 118160 | 0.66 | 0.589646 |
Target: 5'- gGUGGCGcCGCUggugcgCGGCCugaCCGucGAGGc -3' miRNA: 3'- -CACCGC-GCGAa-----GCCGG---GGCucCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 102632 | 0.66 | 0.589646 |
Target: 5'- cGUGaGCGCGCUcgaggCGGCgCUCGAGGc--- -3' miRNA: 3'- -CAC-CGCGCGAa----GCCG-GGGCUCCucuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 40086 | 0.66 | 0.589646 |
Target: 5'- -gGGCGC-CggggcCGGCCCCGGcGAGGAc -3' miRNA: 3'- caCCGCGcGaa---GCCGGGGCUcCUCUU- -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 60409 | 0.66 | 0.583698 |
Target: 5'- -gGGCGCGCa-CGGCCCagcggcccacguccuCGGGGGGc- -3' miRNA: 3'- caCCGCGCGaaGCCGGG---------------GCUCCUCuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 105451 | 0.66 | 0.579739 |
Target: 5'- -cGGCGCGCgccggGGCCCUGGGcGAc-- -3' miRNA: 3'- caCCGCGCGaag--CCGGGGCUC-CUcuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 4138 | 0.66 | 0.579739 |
Target: 5'- -cGGcCGgGC--CGGCCCCGGGGAu-- -3' miRNA: 3'- caCC-GCgCGaaGCCGGGGCUCCUcuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 103169 | 0.66 | 0.576774 |
Target: 5'- cUGGCGCGCUUCGacgccauggacgccGCCCUGGcggccgccccGGAcGAGg -3' miRNA: 3'- cACCGCGCGAAGC--------------CGGGGCU----------CCU-CUU- -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 82675 | 0.66 | 0.576774 |
Target: 5'- -cGGCGCGCcgcgggcgagggcggCGGCCCCcgcGAGGgccAGGAg -3' miRNA: 3'- caCCGCGCGaa-------------GCCGGGG---CUCC---UCUU- -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 75452 | 0.66 | 0.573812 |
Target: 5'- cGUGGCGCGCguagcggUCGGCggccggcuugaagacCCCcAGGGGc- -3' miRNA: 3'- -CACCGCGCGa------AGCCG---------------GGGcUCCUCuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 32354 | 0.66 | 0.56004 |
Target: 5'- -aGGCGCcgggGCUUucuuccCGGaCCgCCGGGGAGGAa -3' miRNA: 3'- caCCGCG----CGAA------GCC-GG-GGCUCCUCUU- -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 34014 | 0.66 | 0.554165 |
Target: 5'- -cGGCGCGC--CGGCCCgGcccuccccgccgggaAGGGGAc -3' miRNA: 3'- caCCGCGCGaaGCCGGGgC---------------UCCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 68880 | 0.66 | 0.550259 |
Target: 5'- -gGGCGCGCc-CGGCCacguCGAGGAc-- -3' miRNA: 3'- caCCGCGCGaaGCCGGg---GCUCCUcuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 127839 | 0.66 | 0.550259 |
Target: 5'- cGUGGCgGCGUcgCGGCugcgCCgGAGGGGGc -3' miRNA: 3'- -CACCG-CGCGaaGCCG----GGgCUCCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 123514 | 0.66 | 0.550259 |
Target: 5'- cUGGCGCGCUUCaugguGGCCCgCGAuuGGuGc- -3' miRNA: 3'- cACCGCGCGAAG-----CCGGG-GCU--CCuCuu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 103805 | 0.66 | 0.550259 |
Target: 5'- -aGGcCGCGCUgucggCGGCCguggcggcggCCGuGGAGAu -3' miRNA: 3'- caCC-GCGCGAa----GCCGG----------GGCuCCUCUu -5' |
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29379 | 5' | -62.3 | NC_006151.1 | + | 96809 | 0.67 | 0.544415 |
Target: 5'- -gGGCGCGCgggcuuuuagcggCGGgCCCGccaauGGGGGAAa -3' miRNA: 3'- caCCGCGCGaa-----------GCCgGGGC-----UCCUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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