miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 5' -62.3 NC_006151.1 + 136210 1.06 0.001061
Target:  5'- cGUGGCGCGCUUCGGCCCCGAGGAGAAg -3'
miRNA:   3'- -CACCGCGCGAAGCCGGGGCUCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 75452 0.66 0.573812
Target:  5'- cGUGGCGCGCguagcggUCGGCggccggcuugaagacCCCcAGGGGc- -3'
miRNA:   3'- -CACCGCGCGa------AGCCG---------------GGGcUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 32354 0.66 0.56004
Target:  5'- -aGGCGCcgggGCUUucuuccCGGaCCgCCGGGGAGGAa -3'
miRNA:   3'- caCCGCG----CGAA------GCC-GG-GGCUCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 34014 0.66 0.554165
Target:  5'- -cGGCGCGC--CGGCCCgGcccuccccgccgggaAGGGGAc -3'
miRNA:   3'- caCCGCGCGaaGCCGGGgC---------------UCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 68880 0.66 0.550259
Target:  5'- -gGGCGCGCc-CGGCCacguCGAGGAc-- -3'
miRNA:   3'- caCCGCGCGaaGCCGGg---GCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 127839 0.66 0.550259
Target:  5'- cGUGGCgGCGUcgCGGCugcgCCgGAGGGGGc -3'
miRNA:   3'- -CACCG-CGCGaaGCCG----GGgCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 123514 0.66 0.550259
Target:  5'- cUGGCGCGCUUCaugguGGCCCgCGAuuGGuGc- -3'
miRNA:   3'- cACCGCGCGAAG-----CCGGG-GCU--CCuCuu -5'
29379 5' -62.3 NC_006151.1 + 103805 0.66 0.550259
Target:  5'- -aGGcCGCGCUgucggCGGCCguggcggcggCCGuGGAGAu -3'
miRNA:   3'- caCC-GCGCGAa----GCCGG----------GGCuCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 96809 0.67 0.544415
Target:  5'- -gGGCGCGCgggcuuuuagcggCGGgCCCGccaauGGGGGAAa -3'
miRNA:   3'- caCCGCGCGaa-----------GCCgGGGC-----UCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 82675 0.66 0.576774
Target:  5'- -cGGCGCGCcgcgggcgagggcggCGGCCCCcgcGAGGgccAGGAg -3'
miRNA:   3'- caCCGCGCGaa-------------GCCGGGG---CUCC---UCUU- -5'
29379 5' -62.3 NC_006151.1 + 103169 0.66 0.576774
Target:  5'- cUGGCGCGCUUCGacgccauggacgccGCCCUGGcggccgccccGGAcGAGg -3'
miRNA:   3'- cACCGCGCGAAGC--------------CGGGGCU----------CCU-CUU- -5'
29379 5' -62.3 NC_006151.1 + 4138 0.66 0.579739
Target:  5'- -cGGcCGgGC--CGGCCCCGGGGAu-- -3'
miRNA:   3'- caCC-GCgCGaaGCCGGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 52371 0.66 0.599581
Target:  5'- -cGGCGCGCccccggGGCCCgCGGGGGc-- -3'
miRNA:   3'- caCCGCGCGaag---CCGGG-GCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 8365 0.66 0.599581
Target:  5'- -aGGCGCGaggccccCGcCCCCGGGGGGGu -3'
miRNA:   3'- caCCGCGCgaa----GCcGGGGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 133755 0.66 0.593617
Target:  5'- -gGGCGCGUgcggaUCGaucuuuauacgcgccGCCCCGcGGGGGAGg -3'
miRNA:   3'- caCCGCGCGa----AGC---------------CGGGGC-UCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 118160 0.66 0.589646
Target:  5'- gGUGGCGcCGCUggugcgCGGCCugaCCGucGAGGc -3'
miRNA:   3'- -CACCGC-GCGAa-----GCCGG---GGCucCUCUu -5'
29379 5' -62.3 NC_006151.1 + 102632 0.66 0.589646
Target:  5'- cGUGaGCGCGCUcgaggCGGCgCUCGAGGc--- -3'
miRNA:   3'- -CAC-CGCGCGAa----GCCG-GGGCUCCucuu -5'
29379 5' -62.3 NC_006151.1 + 40086 0.66 0.589646
Target:  5'- -gGGCGC-CggggcCGGCCCCGGcGAGGAc -3'
miRNA:   3'- caCCGCGcGaa---GCCGGGGCUcCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 60409 0.66 0.583698
Target:  5'- -gGGCGCGCa-CGGCCCagcggcccacguccuCGGGGGGc- -3'
miRNA:   3'- caCCGCGCGaaGCCGGG---------------GCUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 105451 0.66 0.579739
Target:  5'- -cGGCGCGCgccggGGCCCUGGGcGAc-- -3'
miRNA:   3'- caCCGCGCGaag--CCGGGGCUC-CUcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.