miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 5' -62.3 NC_006151.1 + 136210 1.06 0.001061
Target:  5'- cGUGGCGCGCUUCGGCCCCGAGGAGAAg -3'
miRNA:   3'- -CACCGCGCGAAGCCGGGGCUCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 103911 0.81 0.06886
Target:  5'- gGUGGCGCGCg-CGGCCgCCGuGGAGGAg -3'
miRNA:   3'- -CACCGCGCGaaGCCGG-GGCuCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 54615 0.78 0.101655
Target:  5'- -cGGUGCGCcgggCGcGCCCCGGGGGGAAg -3'
miRNA:   3'- caCCGCGCGaa--GC-CGGGGCUCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 52179 0.77 0.13421
Target:  5'- -gGGCGCGCgcgcgaacgCGGCCCCGAagagcucGGAGAGc -3'
miRNA:   3'- caCCGCGCGaa-------GCCGGGGCU-------CCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 66881 0.76 0.152539
Target:  5'- -gGGCGCGCc-CGGCCCCGcgccGGAGGAc -3'
miRNA:   3'- caCCGCGCGaaGCCGGGGCu---CCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 6639 0.75 0.172686
Target:  5'- aUGGagacCGCGCUUauaaGcGCCCCGAGGAGAGc -3'
miRNA:   3'- cACC----GCGCGAAg---C-CGGGGCUCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 2681 0.74 0.199968
Target:  5'- -aGGCGCaGCggcUCGGCCCCGGGGuGc- -3'
miRNA:   3'- caCCGCG-CGa--AGCCGGGGCUCCuCuu -5'
29379 5' -62.3 NC_006151.1 + 77521 0.74 0.208353
Target:  5'- cUGGCGCGCcUCGgccgcgcgugggccGCCCCGcAGGGGAGc -3'
miRNA:   3'- cACCGCGCGaAGC--------------CGGGGC-UCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 105285 0.72 0.253741
Target:  5'- -gGGCGCGCgcgCGGCCgcgccggcgccuCCGAGGAcGAGg -3'
miRNA:   3'- caCCGCGCGaa-GCCGG------------GGCUCCU-CUU- -5'
29379 5' -62.3 NC_006151.1 + 72706 0.72 0.272044
Target:  5'- -aGGUacugcgcaaaGUGCUccUCGGCCCCGAGGGGc- -3'
miRNA:   3'- caCCG----------CGCGA--AGCCGGGGCUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 130269 0.71 0.30488
Target:  5'- -cGGCGCGC---GGCCCCGAGGccgcGGGc -3'
miRNA:   3'- caCCGCGCGaagCCGGGGCUCC----UCUu -5'
29379 5' -62.3 NC_006151.1 + 129328 0.71 0.311802
Target:  5'- -aGGCGgGUUagCGGCCCCGGGGcGGc -3'
miRNA:   3'- caCCGCgCGAa-GCCGGGGCUCCuCUu -5'
29379 5' -62.3 NC_006151.1 + 99687 0.71 0.318842
Target:  5'- --uGCGCGCcgaCGGCgCCGGGGAGAc -3'
miRNA:   3'- cacCGCGCGaa-GCCGgGGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 8017 0.71 0.318842
Target:  5'- -gGGCGCGagaccggcUCGGCCUCGucGGGAGAGa -3'
miRNA:   3'- caCCGCGCga------AGCCGGGGC--UCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 104824 0.71 0.326001
Target:  5'- -cGGCGCGCgaCGGCCUCGccgcggcGGAGGc -3'
miRNA:   3'- caCCGCGCGaaGCCGGGGCu------CCUCUu -5'
29379 5' -62.3 NC_006151.1 + 75546 0.7 0.333278
Target:  5'- cGUGGCcugguacacGCGCUUCucgagGGCCUCGAGGAa-- -3'
miRNA:   3'- -CACCG---------CGCGAAG-----CCGGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 105040 0.7 0.333278
Target:  5'- -cGGCGCuGCUgcUCGGCgCCguCGAGGAGGc -3'
miRNA:   3'- caCCGCG-CGA--AGCCG-GG--GCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 114927 0.7 0.333278
Target:  5'- -cGGCGuCGCgcUCGGCCuCCGGGGuGGg -3'
miRNA:   3'- caCCGC-GCGa-AGCCGG-GGCUCCuCUu -5'
29379 5' -62.3 NC_006151.1 + 67747 0.7 0.348188
Target:  5'- -cGGCGCGg--CGGCCCCGucGGGGu -3'
miRNA:   3'- caCCGCGCgaaGCCGGGGCucCUCUu -5'
29379 5' -62.3 NC_006151.1 + 102272 0.7 0.35582
Target:  5'- -gGGCGCGCUgccggagcgCGGCCCgGccGGGGAc -3'
miRNA:   3'- caCCGCGCGAa--------GCCGGGgCu-CCUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.