miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 5' -62.3 NC_006151.1 + 55452 0.69 0.387507
Target:  5'- -cGGCGcCGC--CGGCCCCGccGGGGGGc -3'
miRNA:   3'- caCCGC-GCGaaGCCGGGGC--UCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 122325 0.69 0.395713
Target:  5'- -cGGUGCGCgu-GGaCCCCGAGGAc-- -3'
miRNA:   3'- caCCGCGCGaagCC-GGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 114240 0.69 0.39654
Target:  5'- gGUGGcCGCGCgggaccccucggagCGcGCCCuCGAGGAGGu -3'
miRNA:   3'- -CACC-GCGCGaa------------GC-CGGG-GCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 84724 0.69 0.412459
Target:  5'- cGUGGCcgagGCGCUcgUGGUgCUCGAGGAGAc -3'
miRNA:   3'- -CACCG----CGCGAa-GCCG-GGGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 105532 0.69 0.412459
Target:  5'- -cGGCGCGCaUCGGgCCCGAGc---- -3'
miRNA:   3'- caCCGCGCGaAGCCgGGGCUCcucuu -5'
29379 5' -62.3 NC_006151.1 + 84783 0.69 0.420994
Target:  5'- -cGGCGCGC----GCCgCCGAGGAGGc -3'
miRNA:   3'- caCCGCGCGaagcCGG-GGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 84756 0.69 0.420994
Target:  5'- -cGGCGCGC----GCCgCCGAGGAGGc -3'
miRNA:   3'- caCCGCGCGaagcCGG-GGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 142572 0.69 0.429635
Target:  5'- -aGGCGCGCUcuccucucCGGUCCCGGcGGGGc- -3'
miRNA:   3'- caCCGCGCGAa-------GCCGGGGCU-CCUCuu -5'
29379 5' -62.3 NC_006151.1 + 75892 0.69 0.429635
Target:  5'- --uGCGCGCgaCGGCCaCCGAGGGc-- -3'
miRNA:   3'- cacCGCGCGaaGCCGG-GGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 48969 0.69 0.429635
Target:  5'- cUGGaCGCGCcucaCGGCgCCCGAGGAc-- -3'
miRNA:   3'- cACC-GCGCGaa--GCCG-GGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 142330 0.68 0.447226
Target:  5'- --cGCGCGCUcgCGGCgCCCGcuuuggaaGGGGGAAa -3'
miRNA:   3'- cacCGCGCGAa-GCCG-GGGC--------UCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 102406 0.68 0.45617
Target:  5'- -cGGCGCGCgucgcgCGGCCCgCGAacGAGGc -3'
miRNA:   3'- caCCGCGCGaa----GCCGGG-GCUc-CUCUu -5'
29379 5' -62.3 NC_006151.1 + 24519 0.68 0.47434
Target:  5'- -gGGCGCcgccacguugcaGCgcgCGGCCCCGAGGu--- -3'
miRNA:   3'- caCCGCG------------CGaa-GCCGGGGCUCCucuu -5'
29379 5' -62.3 NC_006151.1 + 119113 0.68 0.47434
Target:  5'- cGUGaGcCGCGCggcCGGCCUCGuGGGGGc -3'
miRNA:   3'- -CAC-C-GCGCGaa-GCCGGGGCuCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 123752 0.67 0.492866
Target:  5'- uGUGGCggucuuugGCGCg--GGCCCCGGGGGc-- -3'
miRNA:   3'- -CACCG--------CGCGaagCCGGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 124852 0.67 0.501311
Target:  5'- -cGGCGCGUgugcagccUGGCCaaguggcgcgaggCCGAGGAGAu -3'
miRNA:   3'- caCCGCGCGaa------GCCGG-------------GGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 19275 0.67 0.502253
Target:  5'- cGUGGCGCGCgg-GGCCcaCCGGGGc--- -3'
miRNA:   3'- -CACCGCGCGaagCCGG--GGCUCCucuu -5'
29379 5' -62.3 NC_006151.1 + 136648 0.67 0.502253
Target:  5'- cGUGGgGCGC-UCGcCCCuCGGGGAGc- -3'
miRNA:   3'- -CACCgCGCGaAGCcGGG-GCUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 6158 0.67 0.502253
Target:  5'- -cGGCG-GCcUCGGCCUCGGcggcgucgucGGAGAAg -3'
miRNA:   3'- caCCGCgCGaAGCCGGGGCU----------CCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 135925 0.67 0.502253
Target:  5'- cGUGcGCGCGC-UCuGCCgCGGGGAGc- -3'
miRNA:   3'- -CAC-CGCGCGaAGcCGGgGCUCCUCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.