miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 5' -62.3 NC_006151.1 + 2601 0.67 0.511718
Target:  5'- -aGGCGCGCggCGGCagcgggaCCGGGGuccGGGg -3'
miRNA:   3'- caCCGCGCGaaGCCGg------GGCUCC---UCUu -5'
29379 5' -62.3 NC_006151.1 + 2681 0.74 0.199968
Target:  5'- -aGGCGCaGCggcUCGGCCCCGGGGuGc- -3'
miRNA:   3'- caCCGCG-CGa--AGCCGGGGCUCCuCuu -5'
29379 5' -62.3 NC_006151.1 + 4138 0.66 0.579739
Target:  5'- -cGGcCGgGC--CGGCCCCGGGGAu-- -3'
miRNA:   3'- caCC-GCgCGaaGCCGGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 6158 0.67 0.502253
Target:  5'- -cGGCG-GCcUCGGCCUCGGcggcgucgucGGAGAAg -3'
miRNA:   3'- caCCGCgCGaAGCCGGGGCU----------CCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 6639 0.75 0.172686
Target:  5'- aUGGagacCGCGCUUauaaGcGCCCCGAGGAGAGc -3'
miRNA:   3'- cACC----GCGCGAAg---C-CGGGGCUCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 8017 0.71 0.318842
Target:  5'- -gGGCGCGagaccggcUCGGCCUCGucGGGAGAGa -3'
miRNA:   3'- caCCGCGCga------AGCCGGGGC--UCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 8365 0.66 0.599581
Target:  5'- -aGGCGCGaggccccCGcCCCCGGGGGGGu -3'
miRNA:   3'- caCCGCGCgaa----GCcGGGGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 14130 0.67 0.511718
Target:  5'- -aGGCGCGgagCGcGCCCCGAGccgacGAGGAg -3'
miRNA:   3'- caCCGCGCgaaGC-CGGGGCUC-----CUCUU- -5'
29379 5' -62.3 NC_006151.1 + 17407 0.66 0.600576
Target:  5'- cGUGGCGCGCggcagcagggccagCGaGCCgggggcgaucuCCGAGGAGc- -3'
miRNA:   3'- -CACCGCGCGaa------------GC-CGG-----------GGCUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 19275 0.67 0.502253
Target:  5'- cGUGGCGCGCgg-GGCCcaCCGGGGc--- -3'
miRNA:   3'- -CACCGCGCGaagCCGG--GGCUCCucuu -5'
29379 5' -62.3 NC_006151.1 + 24519 0.68 0.47434
Target:  5'- -gGGCGCcgccacguugcaGCgcgCGGCCCCGAGGu--- -3'
miRNA:   3'- caCCGCG------------CGaa-GCCGGGGCUCCucuu -5'
29379 5' -62.3 NC_006151.1 + 27151 0.67 0.511718
Target:  5'- -aGGCG-GUUcacgUCGGCCCCGAGGc--- -3'
miRNA:   3'- caCCGCgCGA----AGCCGGGGCUCCucuu -5'
29379 5' -62.3 NC_006151.1 + 32354 0.66 0.56004
Target:  5'- -aGGCGCcgggGCUUucuuccCGGaCCgCCGGGGAGGAa -3'
miRNA:   3'- caCCGCG----CGAA------GCC-GG-GGCUCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 34014 0.66 0.554165
Target:  5'- -cGGCGCGC--CGGCCCgGcccuccccgccgggaAGGGGAc -3'
miRNA:   3'- caCCGCGCGaaGCCGGGgC---------------UCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 40086 0.66 0.589646
Target:  5'- -gGGCGC-CggggcCGGCCCCGGcGAGGAc -3'
miRNA:   3'- caCCGCGcGaa---GCCGGGGCUcCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 48969 0.69 0.429635
Target:  5'- cUGGaCGCGCcucaCGGCgCCCGAGGAc-- -3'
miRNA:   3'- cACC-GCGCGaa--GCCG-GGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 52179 0.77 0.13421
Target:  5'- -gGGCGCGCgcgcgaacgCGGCCCCGAagagcucGGAGAGc -3'
miRNA:   3'- caCCGCGCGaa-------GCCGGGGCU-------CCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 52371 0.66 0.599581
Target:  5'- -cGGCGCGCccccggGGCCCgCGGGGGc-- -3'
miRNA:   3'- caCCGCGCGaag---CCGGG-GCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 54615 0.78 0.101655
Target:  5'- -cGGUGCGCcgggCGcGCCCCGGGGGGAAg -3'
miRNA:   3'- caCCGCGCGaa--GC-CGGGGCUCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 55452 0.69 0.387507
Target:  5'- -cGGCGcCGC--CGGCCCCGccGGGGGGc -3'
miRNA:   3'- caCCGC-GCGaaGCCGGGGC--UCCUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.