miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 5' -62.3 NC_006151.1 + 142572 0.69 0.429635
Target:  5'- -aGGCGCGCUcuccucucCGGUCCCGGcGGGGc- -3'
miRNA:   3'- caCCGCGCGAa-------GCCGGGGCU-CCUCuu -5'
29379 5' -62.3 NC_006151.1 + 142330 0.68 0.447226
Target:  5'- --cGCGCGCUcgCGGCgCCCGcuuuggaaGGGGGAAa -3'
miRNA:   3'- cacCGCGCGAa-GCCG-GGGC--------UCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 141769 0.67 0.540531
Target:  5'- gGUGGCGuCGCcggUUCuGUCCCGGGGAc-- -3'
miRNA:   3'- -CACCGC-GCG---AAGcCGGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 138019 0.67 0.521255
Target:  5'- -cGcGCGUGCUgcaCaGCCUCGGGGGGGAg -3'
miRNA:   3'- caC-CGCGCGAa--GcCGGGGCUCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 136648 0.67 0.502253
Target:  5'- cGUGGgGCGC-UCGcCCCuCGGGGAGc- -3'
miRNA:   3'- -CACCgCGCGaAGCcGGG-GCUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 136210 1.06 0.001061
Target:  5'- cGUGGCGCGCUUCGGCCCCGAGGAGAAg -3'
miRNA:   3'- -CACCGCGCGAAGCCGGGGCUCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 135925 0.67 0.502253
Target:  5'- cGUGcGCGCGC-UCuGCCgCGGGGAGc- -3'
miRNA:   3'- -CAC-CGCGCGaAGcCGGgGCUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 133755 0.66 0.593617
Target:  5'- -gGGCGCGUgcggaUCGaucuuuauacgcgccGCCCCGcGGGGGAGg -3'
miRNA:   3'- caCCGCGCGa----AGC---------------CGGGGC-UCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 130269 0.71 0.30488
Target:  5'- -cGGCGCGC---GGCCCCGAGGccgcGGGc -3'
miRNA:   3'- caCCGCGCGaagCCGGGGCUCC----UCUu -5'
29379 5' -62.3 NC_006151.1 + 129328 0.71 0.311802
Target:  5'- -aGGCGgGUUagCGGCCCCGGGGcGGc -3'
miRNA:   3'- caCCGCgCGAa-GCCGGGGCUCCuCUu -5'
29379 5' -62.3 NC_006151.1 + 127839 0.66 0.550259
Target:  5'- cGUGGCgGCGUcgCGGCugcgCCgGAGGGGGc -3'
miRNA:   3'- -CACCG-CGCGaaGCCG----GGgCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 124852 0.67 0.501311
Target:  5'- -cGGCGCGUgugcagccUGGCCaaguggcgcgaggCCGAGGAGAu -3'
miRNA:   3'- caCCGCGCGaa------GCCGG-------------GGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 123752 0.67 0.492866
Target:  5'- uGUGGCggucuuugGCGCg--GGCCCCGGGGGc-- -3'
miRNA:   3'- -CACCG--------CGCGaagCCGGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 123514 0.66 0.550259
Target:  5'- cUGGCGCGCUUCaugguGGCCCgCGAuuGGuGc- -3'
miRNA:   3'- cACCGCGCGAAG-----CCGGG-GCU--CCuCuu -5'
29379 5' -62.3 NC_006151.1 + 122325 0.69 0.395713
Target:  5'- -cGGUGCGCgu-GGaCCCCGAGGAc-- -3'
miRNA:   3'- caCCGCGCGaagCC-GGGGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 119113 0.68 0.47434
Target:  5'- cGUGaGcCGCGCggcCGGCCUCGuGGGGGc -3'
miRNA:   3'- -CAC-C-GCGCGaa-GCCGGGGCuCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 118160 0.66 0.589646
Target:  5'- gGUGGCGcCGCUggugcgCGGCCugaCCGucGAGGc -3'
miRNA:   3'- -CACCGC-GCGAa-----GCCGG---GGCucCUCUu -5'
29379 5' -62.3 NC_006151.1 + 114927 0.7 0.333278
Target:  5'- -cGGCGuCGCgcUCGGCCuCCGGGGuGGg -3'
miRNA:   3'- caCCGC-GCGa-AGCCGG-GGCUCCuCUu -5'
29379 5' -62.3 NC_006151.1 + 114240 0.69 0.39654
Target:  5'- gGUGGcCGCGCgggaccccucggagCGcGCCCuCGAGGAGGu -3'
miRNA:   3'- -CACC-GCGCGaa------------GC-CGGG-GCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 105532 0.69 0.412459
Target:  5'- -cGGCGCGCaUCGGgCCCGAGc---- -3'
miRNA:   3'- caCCGCGCGaAGCCgGGGCUCcucuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.