miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29379 5' -62.3 NC_006151.1 + 105451 0.66 0.579739
Target:  5'- -cGGCGCGCgccggGGCCCUGGGcGAc-- -3'
miRNA:   3'- caCCGCGCGaag--CCGGGGCUC-CUcuu -5'
29379 5' -62.3 NC_006151.1 + 105285 0.72 0.253741
Target:  5'- -gGGCGCGCgcgCGGCCgcgccggcgccuCCGAGGAcGAGg -3'
miRNA:   3'- caCCGCGCGaa-GCCGG------------GGCUCCU-CUU- -5'
29379 5' -62.3 NC_006151.1 + 105040 0.7 0.333278
Target:  5'- -cGGCGCuGCUgcUCGGCgCCguCGAGGAGGc -3'
miRNA:   3'- caCCGCG-CGA--AGCCG-GG--GCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 104824 0.71 0.326001
Target:  5'- -cGGCGCGCgaCGGCCUCGccgcggcGGAGGc -3'
miRNA:   3'- caCCGCGCGaaGCCGGGGCu------CCUCUu -5'
29379 5' -62.3 NC_006151.1 + 103911 0.81 0.06886
Target:  5'- gGUGGCGCGCg-CGGCCgCCGuGGAGGAg -3'
miRNA:   3'- -CACCGCGCGaaGCCGG-GGCuCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 103805 0.66 0.550259
Target:  5'- -aGGcCGCGCUgucggCGGCCguggcggcggCCGuGGAGAu -3'
miRNA:   3'- caCC-GCGCGAa----GCCGG----------GGCuCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 103169 0.66 0.576774
Target:  5'- cUGGCGCGCUUCGacgccauggacgccGCCCUGGcggccgccccGGAcGAGg -3'
miRNA:   3'- cACCGCGCGAAGC--------------CGGGGCU----------CCU-CUU- -5'
29379 5' -62.3 NC_006151.1 + 102632 0.66 0.589646
Target:  5'- cGUGaGCGCGCUcgaggCGGCgCUCGAGGc--- -3'
miRNA:   3'- -CAC-CGCGCGAa----GCCG-GGGCUCCucuu -5'
29379 5' -62.3 NC_006151.1 + 102406 0.68 0.45617
Target:  5'- -cGGCGCGCgucgcgCGGCCCgCGAacGAGGc -3'
miRNA:   3'- caCCGCGCGaa----GCCGGG-GCUc-CUCUu -5'
29379 5' -62.3 NC_006151.1 + 102272 0.7 0.35582
Target:  5'- -gGGCGCGCUgccggagcgCGGCCCgGccGGGGAc -3'
miRNA:   3'- caCCGCGCGAa--------GCCGGGgCu-CCUCUu -5'
29379 5' -62.3 NC_006151.1 + 99687 0.71 0.318842
Target:  5'- --uGCGCGCcgaCGGCgCCGGGGAGAc -3'
miRNA:   3'- cacCGCGCGaa-GCCGgGGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 96809 0.67 0.544415
Target:  5'- -gGGCGCGCgggcuuuuagcggCGGgCCCGccaauGGGGGAAa -3'
miRNA:   3'- caCCGCGCGaa-----------GCCgGGGC-----UCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 84783 0.69 0.420994
Target:  5'- -cGGCGCGC----GCCgCCGAGGAGGc -3'
miRNA:   3'- caCCGCGCGaagcCGG-GGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 84756 0.69 0.420994
Target:  5'- -cGGCGCGC----GCCgCCGAGGAGGc -3'
miRNA:   3'- caCCGCGCGaagcCGG-GGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 84724 0.69 0.412459
Target:  5'- cGUGGCcgagGCGCUcgUGGUgCUCGAGGAGAc -3'
miRNA:   3'- -CACCG----CGCGAa-GCCG-GGGCUCCUCUu -5'
29379 5' -62.3 NC_006151.1 + 82675 0.66 0.576774
Target:  5'- -cGGCGCGCcgcgggcgagggcggCGGCCCCcgcGAGGgccAGGAg -3'
miRNA:   3'- caCCGCGCGaa-------------GCCGGGG---CUCC---UCUU- -5'
29379 5' -62.3 NC_006151.1 + 77521 0.74 0.208353
Target:  5'- cUGGCGCGCcUCGgccgcgcgugggccGCCCCGcAGGGGAGc -3'
miRNA:   3'- cACCGCGCGaAGC--------------CGGGGC-UCCUCUU- -5'
29379 5' -62.3 NC_006151.1 + 76664 0.67 0.511718
Target:  5'- -gGGCGCGUgugcgCGGUCgCUGGGGAGc- -3'
miRNA:   3'- caCCGCGCGaa---GCCGG-GGCUCCUCuu -5'
29379 5' -62.3 NC_006151.1 + 75892 0.69 0.429635
Target:  5'- --uGCGCGCgaCGGCCaCCGAGGGc-- -3'
miRNA:   3'- cacCGCGCGaaGCCGG-GGCUCCUcuu -5'
29379 5' -62.3 NC_006151.1 + 75546 0.7 0.333278
Target:  5'- cGUGGCcugguacacGCGCUUCucgagGGCCUCGAGGAa-- -3'
miRNA:   3'- -CACCG---------CGCGAAG-----CCGGGGCUCCUcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.