miRNA display CGI


Results 101 - 120 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 96153 0.68 0.447436
Target:  5'- -cGCGUcaaaGaCCUCgGGCCACGCGUCCg -3'
miRNA:   3'- ccCGCAc---CcGGAG-CCGGUGCGCAGGg -5'
29380 3' -64 NC_006151.1 + 5731 0.68 0.447436
Target:  5'- uGGCGccgGGGUCcgaGGCCGCGCcgccggCCCg -3'
miRNA:   3'- cCCGCa--CCCGGag-CCGGUGCGca----GGG- -5'
29380 3' -64 NC_006151.1 + 57604 0.68 0.447436
Target:  5'- aGGCc--GGCCUCGGCCGCGgcCGcCUCg -3'
miRNA:   3'- cCCGcacCCGGAGCCGGUGC--GCaGGG- -5'
29380 3' -64 NC_006151.1 + 2284 0.68 0.447436
Target:  5'- cGGCGgGGcGCCcgCGGCgGCGaCGgcgCCCg -3'
miRNA:   3'- cCCGCaCC-CGGa-GCCGgUGC-GCa--GGG- -5'
29380 3' -64 NC_006151.1 + 79263 0.68 0.447436
Target:  5'- cGGCGc-GGUCUCGacGCCGCGCGgcgUCCg -3'
miRNA:   3'- cCCGCacCCGGAGC--CGGUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 82685 0.68 0.445723
Target:  5'- cGGGCGaGGGCggCGGCCccCGCGagggccaggaggCCCg -3'
miRNA:   3'- -CCCGCaCCCGgaGCCGGu-GCGCa-----------GGG- -5'
29380 3' -64 NC_006151.1 + 31671 0.68 0.438909
Target:  5'- aGGGCGgaggaaGGGCCg-GGCCGC-CGagCCg -3'
miRNA:   3'- -CCCGCa-----CCCGGagCCGGUGcGCagGG- -5'
29380 3' -64 NC_006151.1 + 49637 0.68 0.438909
Target:  5'- uGGGgGUGGGCCguggaggaggUCGaGCCcuccgggcCGCG-CCCg -3'
miRNA:   3'- -CCCgCACCCGG----------AGC-CGGu-------GCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 130521 0.68 0.438909
Target:  5'- cGGGCGcGGGCgUCGcGUaCACGCc-CCCg -3'
miRNA:   3'- -CCCGCaCCCGgAGC-CG-GUGCGcaGGG- -5'
29380 3' -64 NC_006151.1 + 8239 0.68 0.438909
Target:  5'- cGGCGgggaGGGCCg-GGCCGgCGCG-CCg -3'
miRNA:   3'- cCCGCa---CCCGGagCCGGU-GCGCaGGg -5'
29380 3' -64 NC_006151.1 + 86784 0.68 0.438909
Target:  5'- uGGGCG-GGGCUUCuGCCuaaaaGCGgggccUCCCc -3'
miRNA:   3'- -CCCGCaCCCGGAGcCGGug---CGC-----AGGG- -5'
29380 3' -64 NC_006151.1 + 137618 0.68 0.433838
Target:  5'- cGGGCG-GGGaCCcCGGCgccuccgcccucgucCGCGCccccGUCCCg -3'
miRNA:   3'- -CCCGCaCCC-GGaGCCG---------------GUGCG----CAGGG- -5'
29380 3' -64 NC_006151.1 + 4050 0.68 0.430476
Target:  5'- cGGGCGcGGGCCcCGuCCACGCuGUagcgcaCCa -3'
miRNA:   3'- -CCCGCaCCCGGaGCcGGUGCG-CAg-----GG- -5'
29380 3' -64 NC_006151.1 + 3118 0.68 0.430476
Target:  5'- cGGCGcGGGUCccaGGCCggGCGCGgggcgCCCu -3'
miRNA:   3'- cCCGCaCCCGGag-CCGG--UGCGCa----GGG- -5'
29380 3' -64 NC_006151.1 + 4362 0.68 0.430476
Target:  5'- cGGGCGcagaGGGCCUCGaCgGuCGCcUCCCc -3'
miRNA:   3'- -CCCGCa---CCCGGAGCcGgU-GCGcAGGG- -5'
29380 3' -64 NC_006151.1 + 78535 0.68 0.430476
Target:  5'- cGGCGgGGGCCUCGccGCCgACGaCGaagcacgCCCg -3'
miRNA:   3'- cCCGCaCCCGGAGC--CGG-UGC-GCa------GGG- -5'
29380 3' -64 NC_006151.1 + 61769 0.68 0.427965
Target:  5'- gGGGcCGUGGuGCUgCGGCgcgaggccggccggCugGCGUUCCa -3'
miRNA:   3'- -CCC-GCACC-CGGaGCCG--------------GugCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 101462 0.69 0.422139
Target:  5'- uGGGCcUGGGCCUCuaccGCCGCGgcgaCGUCg- -3'
miRNA:   3'- -CCCGcACCCGGAGc---CGGUGC----GCAGgg -5'
29380 3' -64 NC_006151.1 + 11044 0.69 0.422139
Target:  5'- cGGCcggGGGCC-CGGCCuggACGCGggCCa -3'
miRNA:   3'- cCCGca-CCCGGaGCCGG---UGCGCagGG- -5'
29380 3' -64 NC_006151.1 + 60202 0.69 0.4139
Target:  5'- cGGGCGUGaagauGGgCUC-GCCGCGCGcgCCg -3'
miRNA:   3'- -CCCGCAC-----CCgGAGcCGGUGCGCa-GGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.