miRNA display CGI


Results 81 - 100 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 13408 0.67 0.491381
Target:  5'- cGGCcaaugggGGaGCCg-GGCC-CGCGUCCCc -3'
miRNA:   3'- cCCGca-----CC-CGGagCCGGuGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 123035 0.67 0.491381
Target:  5'- uGGCGUGGGCggaccugcCGGCCGCgGCG-CUg -3'
miRNA:   3'- cCCGCACCCGga------GCCGGUG-CGCaGGg -5'
29380 3' -64 NC_006151.1 + 122976 0.67 0.491381
Target:  5'- cGGCGacggGGGCgUCGGCgACGaagaCGggCCCg -3'
miRNA:   3'- cCCGCa---CCCGgAGCCGgUGC----GCa-GGG- -5'
29380 3' -64 NC_006151.1 + 122775 0.67 0.491381
Target:  5'- cGGGCugcucGUGGGC---GGCUGCGCGgccucgCCCg -3'
miRNA:   3'- -CCCG-----CACCCGgagCCGGUGCGCa-----GGG- -5'
29380 3' -64 NC_006151.1 + 30642 0.67 0.491381
Target:  5'- uGGGUGggggaggGGGUUgauGGCCGCGCugGUUCCg -3'
miRNA:   3'- -CCCGCa------CCCGGag-CCGGUGCG--CAGGG- -5'
29380 3' -64 NC_006151.1 + 3411 0.67 0.482427
Target:  5'- cGGcGUGUGGGUCUcgcCGGCCgggACGCGgcggaagCCg -3'
miRNA:   3'- -CC-CGCACCCGGA---GCCGG---UGCGCa------GGg -5'
29380 3' -64 NC_006151.1 + 64113 0.67 0.482427
Target:  5'- aGGuCGUGGcCCggCGGUgGCGCG-CCCg -3'
miRNA:   3'- cCC-GCACCcGGa-GCCGgUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 67987 0.67 0.482427
Target:  5'- cGGCGgcccgccGGcGCCgCGGCCACgggcucggcgGCGUCCa -3'
miRNA:   3'- cCCGCa------CC-CGGaGCCGGUG----------CGCAGGg -5'
29380 3' -64 NC_006151.1 + 100290 0.67 0.482427
Target:  5'- cGGGCGcacGGCCUCcGUCuuCGCG-CCCg -3'
miRNA:   3'- -CCCGCac-CCGGAGcCGGu-GCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 114913 0.67 0.482427
Target:  5'- cGGGCGcacGGCCcCGGCguCGCG-CUCg -3'
miRNA:   3'- -CCCGCac-CCGGaGCCGguGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 50820 0.68 0.473552
Target:  5'- -aGCGUccacGCCUCGGcCCGCGCcgccGUCCCc -3'
miRNA:   3'- ccCGCAcc--CGGAGCC-GGUGCG----CAGGG- -5'
29380 3' -64 NC_006151.1 + 54426 0.68 0.473552
Target:  5'- uGGCGcGGcGCUUCGGCgACgagGCG-CCCg -3'
miRNA:   3'- cCCGCaCC-CGGAGCCGgUG---CGCaGGG- -5'
29380 3' -64 NC_006151.1 + 80701 0.68 0.473552
Target:  5'- cGGCGcGGGCCUCacgaCCugGCGUUUa -3'
miRNA:   3'- cCCGCaCCCGGAGcc--GGugCGCAGGg -5'
29380 3' -64 NC_006151.1 + 58120 0.68 0.472669
Target:  5'- cGGGCGgGGucgcgucgcccgcGCCguacgCGGCCGCGUGcCaCCg -3'
miRNA:   3'- -CCCGCaCC-------------CGGa----GCCGGUGCGCaG-GG- -5'
29380 3' -64 NC_006151.1 + 116854 0.68 0.46476
Target:  5'- cGGCGgcgGGGaa--GGCCGCGuCGUCgCCg -3'
miRNA:   3'- cCCGCa--CCCggagCCGGUGC-GCAG-GG- -5'
29380 3' -64 NC_006151.1 + 70633 0.68 0.46476
Target:  5'- cGGCG-GcGCCgUGGCCGCGCGcgaggcgCCCg -3'
miRNA:   3'- cCCGCaCcCGGaGCCGGUGCGCa------GGG- -5'
29380 3' -64 NC_006151.1 + 119376 0.68 0.463885
Target:  5'- uGGCGUGcGGCUUCuGCCcgcagcugcuggcGCGCGUgCUg -3'
miRNA:   3'- cCCGCAC-CCGGAGcCGG-------------UGCGCAgGG- -5'
29380 3' -64 NC_006151.1 + 15049 0.68 0.456053
Target:  5'- cGGCGcgcgGGGCCcCGGCgCcuucuGCGCGgCCCc -3'
miRNA:   3'- cCCGCa---CCCGGaGCCG-G-----UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 57383 0.68 0.456053
Target:  5'- aGGCGUGGcaggaccagGCCagGGCCGCGuCGaagacgCCCu -3'
miRNA:   3'- cCCGCACC---------CGGagCCGGUGC-GCa-----GGG- -5'
29380 3' -64 NC_006151.1 + 81096 0.68 0.456053
Target:  5'- aGGUGcUGGGaCUCGGgCAUGCGaUCCg -3'
miRNA:   3'- cCCGC-ACCCgGAGCCgGUGCGC-AGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.