miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 100891 0.67 0.527923
Target:  5'- aGGUGcUGcGCCgCGGCgCGCGCGcgCCCg -3'
miRNA:   3'- cCCGC-ACcCGGaGCCG-GUGCGCa-GGG- -5'
29380 3' -64 NC_006151.1 + 126081 0.67 0.527923
Target:  5'- gGGGcCGUGaucucGGCCgUCGGCgGCaugGUGUCCUu -3'
miRNA:   3'- -CCC-GCAC-----CCGG-AGCCGgUG---CGCAGGG- -5'
29380 3' -64 NC_006151.1 + 40074 0.67 0.527923
Target:  5'- -cGCGgGGGCCUCGGgCGC-CGgggccggCCCc -3'
miRNA:   3'- ccCGCaCCCGGAGCCgGUGcGCa------GGG- -5'
29380 3' -64 NC_006151.1 + 130353 0.67 0.527923
Target:  5'- cGGCGUcGuGGUUgaCGGCCGCGCGcgCCg -3'
miRNA:   3'- cCCGCA-C-CCGGa-GCCGGUGCGCa-GGg -5'
29380 3' -64 NC_006151.1 + 112258 0.67 0.526997
Target:  5'- -cGUGUGGGCCagauaauUUaGCUugGCGUCCg -3'
miRNA:   3'- ccCGCACCCGG-------AGcCGGugCGCAGGg -5'
29380 3' -64 NC_006151.1 + 19389 0.67 0.518687
Target:  5'- uGGGCGUGGcccGCCggaCGGUCAggUGCGgcgaCCa -3'
miRNA:   3'- -CCCGCACC---CGGa--GCCGGU--GCGCag--GG- -5'
29380 3' -64 NC_006151.1 + 20136 0.67 0.518687
Target:  5'- gGGGCG-GGcGCCgcgggGGCgGCGCGUggaCCg -3'
miRNA:   3'- -CCCGCaCC-CGGag---CCGgUGCGCAg--GG- -5'
29380 3' -64 NC_006151.1 + 57927 0.67 0.518687
Target:  5'- aGGGCGUGGaaggcgcggaaGCCgagcgCgGGCCACagccCGUCCg -3'
miRNA:   3'- -CCCGCACC-----------CGGa----G-CCGGUGc---GCAGGg -5'
29380 3' -64 NC_006151.1 + 4725 0.67 0.518687
Target:  5'- aGGCGcacgaGGGCCUCGuGCUGCuuccucgaGUCCCc -3'
miRNA:   3'- cCCGCa----CCCGGAGC-CGGUGcg------CAGGG- -5'
29380 3' -64 NC_006151.1 + 57518 0.67 0.518687
Target:  5'- cGGCGgcgGcGGCCgccuccggcgCGGCCGCGggcaCGUCgCCg -3'
miRNA:   3'- cCCGCa--C-CCGGa---------GCCGGUGC----GCAG-GG- -5'
29380 3' -64 NC_006151.1 + 19857 0.67 0.518687
Target:  5'- cGGCGgagaggcucgGGGCCUCGGUgGagaGCG-CCa -3'
miRNA:   3'- cCCGCa---------CCCGGAGCCGgUg--CGCaGGg -5'
29380 3' -64 NC_006151.1 + 43943 0.67 0.509515
Target:  5'- gGGGCcggGGGCCcucccCGGCCGCccCGaCCCg -3'
miRNA:   3'- -CCCGca-CCCGGa----GCCGGUGc-GCaGGG- -5'
29380 3' -64 NC_006151.1 + 133616 0.67 0.509515
Target:  5'- gGGGCGUcuggGGGUCgcggCGGCCgGgGCGguggUCCg -3'
miRNA:   3'- -CCCGCA----CCCGGa---GCCGG-UgCGCa---GGG- -5'
29380 3' -64 NC_006151.1 + 39294 0.67 0.509515
Target:  5'- cGGCGcGGGaCCUCGGCUuCGCcggCgCCg -3'
miRNA:   3'- cCCGCaCCC-GGAGCCGGuGCGca-G-GG- -5'
29380 3' -64 NC_006151.1 + 83309 0.67 0.509515
Target:  5'- uGGCGUagacguugcgcaGGGCCgugagcaGG-CGCGCGUCCa -3'
miRNA:   3'- cCCGCA------------CCCGGag-----CCgGUGCGCAGGg -5'
29380 3' -64 NC_006151.1 + 4952 0.67 0.509515
Target:  5'- cGGCGgGGGCCcgUCGGCCAUgaGCGa--- -3'
miRNA:   3'- cCCGCaCCCGG--AGCCGGUG--CGCaggg -5'
29380 3' -64 NC_006151.1 + 59353 0.67 0.507689
Target:  5'- aGGGCcgcgcgcacggGGcGCCgcgCGGCCGucguCGCGUCCa -3'
miRNA:   3'- -CCCGca---------CC-CGGa--GCCGGU----GCGCAGGg -5'
29380 3' -64 NC_006151.1 + 139646 0.67 0.500412
Target:  5'- cGGCGcggGGGUCgCGGCgGgCGCGccgCCCg -3'
miRNA:   3'- cCCGCa--CCCGGaGCCGgU-GCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 129447 0.67 0.500412
Target:  5'- uGGGCG-GGGCgCaCGGCCGuggGCGggacgagCCCg -3'
miRNA:   3'- -CCCGCaCCCG-GaGCCGGUg--CGCa------GGG- -5'
29380 3' -64 NC_006151.1 + 36384 0.67 0.500412
Target:  5'- aGGcCG-GGGCCcccggCGGCCccggGCGCucGUCCCc -3'
miRNA:   3'- cCC-GCaCCCGGa----GCCGG----UGCG--CAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.