miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 51118 0.71 0.309581
Target:  5'- aGGaUGcGGGCCUCGcGCaGgGCGUCCCg -3'
miRNA:   3'- cCC-GCaCCCGGAGC-CGgUgCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 64850 0.71 0.316325
Target:  5'- cGGCGaGGGCCUCGGCgGagggcCGCuG-CCCg -3'
miRNA:   3'- cCCGCaCCCGGAGCCGgU-----GCG-CaGGG- -5'
29380 3' -64 NC_006151.1 + 31259 0.71 0.316325
Target:  5'- cGGGCGagccgGGGCCccCGGCC-CGC-UCCa -3'
miRNA:   3'- -CCCGCa----CCCGGa-GCCGGuGCGcAGGg -5'
29380 3' -64 NC_006151.1 + 84475 0.71 0.316325
Target:  5'- -cGCGUGGuucGCCUUcgaGGCCGCuGCGaUCCCg -3'
miRNA:   3'- ccCGCACC---CGGAG---CCGGUG-CGC-AGGG- -5'
29380 3' -64 NC_006151.1 + 141425 0.7 0.330145
Target:  5'- cGGGCGc-GGCC-CGGCgcgaACGaCGUCCCc -3'
miRNA:   3'- -CCCGCacCCGGaGCCGg---UGC-GCAGGG- -5'
29380 3' -64 NC_006151.1 + 130475 0.7 0.336507
Target:  5'- aGGGCGaUGGccuGCCgcagCGcgcggcgccacacGCCGCGCGUCUCg -3'
miRNA:   3'- -CCCGC-ACC---CGGa---GC-------------CGGUGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 125471 0.7 0.33722
Target:  5'- uGGCcacGGCCgcgcUCGGCCAgCGCGUCUCg -3'
miRNA:   3'- cCCGcacCCGG----AGCCGGU-GCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 88727 0.7 0.341517
Target:  5'- cGGCGUccGCCgCGGCCACGCGcacggacaccucgCCCg -3'
miRNA:   3'- cCCGCAccCGGaGCCGGUGCGCa------------GGG- -5'
29380 3' -64 NC_006151.1 + 40582 0.7 0.344404
Target:  5'- cGGCGgaGGG-CUCGGCgGCGgaggauCGUCCCg -3'
miRNA:   3'- cCCGCa-CCCgGAGCCGgUGC------GCAGGG- -5'
29380 3' -64 NC_006151.1 + 76817 0.7 0.344404
Target:  5'- aGGGCG-GGcGCguaguggCGGCC-CGCGUCCg -3'
miRNA:   3'- -CCCGCaCC-CGga-----GCCGGuGCGCAGGg -5'
29380 3' -64 NC_006151.1 + 117331 0.7 0.344404
Target:  5'- cGGCGUcGGCCUCGGCCu--UG-CCCa -3'
miRNA:   3'- cCCGCAcCCGGAGCCGGugcGCaGGG- -5'
29380 3' -64 NC_006151.1 + 78142 0.7 0.350964
Target:  5'- cGGGCGccucGGacgacGCCUCGGCCGCcguggucgaggccGUGUCCg -3'
miRNA:   3'- -CCCGCa---CC-----CGGAGCCGGUG-------------CGCAGGg -5'
29380 3' -64 NC_006151.1 + 75214 0.7 0.351698
Target:  5'- aGGGCGUcgGGGCgCgcgUCGGCCACGUaggCgCCg -3'
miRNA:   3'- -CCCGCA--CCCG-G---AGCCGGUGCGca-G-GG- -5'
29380 3' -64 NC_006151.1 + 126411 0.7 0.351698
Target:  5'- -cGCGUcgGGGCgaUGGCCACGCGcCgCCg -3'
miRNA:   3'- ccCGCA--CCCGgaGCCGGUGCGCaG-GG- -5'
29380 3' -64 NC_006151.1 + 13948 0.7 0.354647
Target:  5'- cGGGCGccccgGGGaCgcgcCGGCCAugggggagccgggccCGCGUCCCc -3'
miRNA:   3'- -CCCGCa----CCCgGa---GCCGGU---------------GCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 29206 0.7 0.356869
Target:  5'- gGGGCGcggcgggguggggaUGGGUCaccgccgggUCGGCCGCGC--CCCg -3'
miRNA:   3'- -CCCGC--------------ACCCGG---------AGCCGGUGCGcaGGG- -5'
29380 3' -64 NC_006151.1 + 50380 0.7 0.359101
Target:  5'- gGGGCGagacgcGGGCCccgCGGUCcucGCGCGgCCCc -3'
miRNA:   3'- -CCCGCa-----CCCGGa--GCCGG---UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 68279 0.7 0.366612
Target:  5'- cGGCGccgGGcGCCacggCGGCCagGCGCGcgCCCa -3'
miRNA:   3'- cCCGCa--CC-CGGa---GCCGG--UGCGCa-GGG- -5'
29380 3' -64 NC_006151.1 + 57841 0.7 0.366612
Target:  5'- aGGGCGcacGGGUgCUCcacggcgcuGGUCGCGCGcCCCg -3'
miRNA:   3'- -CCCGCa--CCCG-GAG---------CCGGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 36332 0.7 0.366612
Target:  5'- cGGGcCGgcuccGGGCCcCGGCCGC-CGaCCCc -3'
miRNA:   3'- -CCC-GCa----CCCGGaGCCGGUGcGCaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.