miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 97375 0.72 0.271418
Target:  5'- cGGGCGcggcggGGGCgUCGGCCu--CGUCCg -3'
miRNA:   3'- -CCCGCa-----CCCGgAGCCGGugcGCAGGg -5'
29380 3' -64 NC_006151.1 + 98359 0.72 0.277506
Target:  5'- cGGGCGUgcgcGGGCuCUgGGCgCGCGCGcugcgCCUg -3'
miRNA:   3'- -CCCGCA----CCCG-GAgCCG-GUGCGCa----GGG- -5'
29380 3' -64 NC_006151.1 + 100481 0.72 0.277506
Target:  5'- aGGCGcUGGGCCUgcaGGCgCcCGUGUUCCg -3'
miRNA:   3'- cCCGC-ACCCGGAg--CCG-GuGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 132853 0.72 0.277506
Target:  5'- cGGGCGgccGGCCcggGGCCGCGCccCCCa -3'
miRNA:   3'- -CCCGCac-CCGGag-CCGGUGCGcaGGG- -5'
29380 3' -64 NC_006151.1 + 119439 0.72 0.277506
Target:  5'- cGGGCacguucGUGGGCCgCGGCgACGUGgacgCCg -3'
miRNA:   3'- -CCCG------CACCCGGaGCCGgUGCGCa---GGg -5'
29380 3' -64 NC_006151.1 + 4524 0.72 0.283702
Target:  5'- aGGGCccagagcGGGUCcugggCGGCCAUGgCGUCCCc -3'
miRNA:   3'- -CCCGca-----CCCGGa----GCCGGUGC-GCAGGG- -5'
29380 3' -64 NC_006151.1 + 111281 0.72 0.286211
Target:  5'- cGGGCGggggguacGcGGCCUggcccacgaacgcggCGGCCGCGUG-CCCg -3'
miRNA:   3'- -CCCGCa-------C-CCGGA---------------GCCGGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 129795 0.71 0.288104
Target:  5'- cGGCGUGGGCCcgcaugaGGCCcgugagcgcggagcGCGCGgcggcguagCCCa -3'
miRNA:   3'- cCCGCACCCGGag-----CCGG--------------UGCGCa--------GGG- -5'
29380 3' -64 NC_006151.1 + 6158 0.71 0.290007
Target:  5'- cGGCGgccucGGCCUCGGCgGCGuCGUCg- -3'
miRNA:   3'- cCCGCac---CCGGAGCCGgUGC-GCAGgg -5'
29380 3' -64 NC_006151.1 + 2459 0.71 0.290007
Target:  5'- gGGGCGccGaGCCcccagcggUUGGCCGCGCGgugCCCg -3'
miRNA:   3'- -CCCGCacC-CGG--------AGCCGGUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 134790 0.71 0.290007
Target:  5'- cGGGCcuGUGaGGCCgcggCGGCC-CGCGccggaCCCg -3'
miRNA:   3'- -CCCG--CAC-CCGGa---GCCGGuGCGCa----GGG- -5'
29380 3' -64 NC_006151.1 + 3944 0.71 0.296422
Target:  5'- cGGGCGcgggcuccgcGGGCC-CgGGCCGCGCGgcggCCUc -3'
miRNA:   3'- -CCCGCa---------CCCGGaG-CCGGUGCGCa---GGG- -5'
29380 3' -64 NC_006151.1 + 114680 0.71 0.296422
Target:  5'- -cGCGaaGGCCUCGuGCUcgaaggGCGCGUCCCc -3'
miRNA:   3'- ccCGCacCCGGAGC-CGG------UGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 28531 0.71 0.29707
Target:  5'- cGGGCGUccGGGaCCggccaaugggggagcCGuGCC-CGCGUCCCg -3'
miRNA:   3'- -CCCGCA--CCC-GGa--------------GC-CGGuGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 22534 0.71 0.299671
Target:  5'- cGGGCG-GGGCCgggucaggcggaGGCCACGUggcgguagccgucGUUCCg -3'
miRNA:   3'- -CCCGCaCCCGGag----------CCGGUGCG-------------CAGGG- -5'
29380 3' -64 NC_006151.1 + 3681 0.71 0.302946
Target:  5'- gGGGCGgcGGGCCcCGGgCGCGCGgcgCUUc -3'
miRNA:   3'- -CCCGCa-CCCGGaGCCgGUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 135498 0.71 0.302946
Target:  5'- cGGCGcGcGGCCUCGGCCGaggccaucaCGUCCUc -3'
miRNA:   3'- cCCGCaC-CCGGAGCCGGUgc-------GCAGGG- -5'
29380 3' -64 NC_006151.1 + 51118 0.71 0.309581
Target:  5'- aGGaUGcGGGCCUCGcGCaGgGCGUCCCg -3'
miRNA:   3'- cCC-GCaCCCGGAGC-CGgUgCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 127385 0.71 0.309581
Target:  5'- gGGGUGgcggGGGCCgCGGCCGaguCGaCGggagCCCg -3'
miRNA:   3'- -CCCGCa---CCCGGaGCCGGU---GC-GCa---GGG- -5'
29380 3' -64 NC_006151.1 + 3455 0.71 0.309581
Target:  5'- cGGGCGcgGGGUgCUCGGgCAUGgG-CCCg -3'
miRNA:   3'- -CCCGCa-CCCG-GAGCCgGUGCgCaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.