miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 22082 0.66 0.593049
Target:  5'- uGGGCGcgguacgUGGGCCgccggugGGCCAC-CGcCUCg -3'
miRNA:   3'- -CCCGC-------ACCCGGag-----CCGGUGcGCaGGG- -5'
29380 3' -64 NC_006151.1 + 22272 0.66 0.57492
Target:  5'- cGGGCGggGGGaaggUCGGCgcgggCACGgCGUCCa -3'
miRNA:   3'- -CCCGCa-CCCgg--AGCCG-----GUGC-GCAGGg -5'
29380 3' -64 NC_006151.1 + 22534 0.71 0.299671
Target:  5'- cGGGCG-GGGCCgggucaggcggaGGCCACGUggcgguagccgucGUUCCg -3'
miRNA:   3'- -CCCGCaCCCGGag----------CCGGUGCG-------------CAGGG- -5'
29380 3' -64 NC_006151.1 + 23899 0.78 0.110601
Target:  5'- cGGGC-UGGGCgUCGGUCGCGgG-CCCg -3'
miRNA:   3'- -CCCGcACCCGgAGCCGGUGCgCaGGG- -5'
29380 3' -64 NC_006151.1 + 25209 0.74 0.201791
Target:  5'- uGGGCGU-GGCCUCGGCgGagcCGCGaCCUc -3'
miRNA:   3'- -CCCGCAcCCGGAGCCGgU---GCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 26351 0.78 0.100186
Target:  5'- gGGGCGgcggcGGGCCgcgUCgGGgCGCGCGUCCCc -3'
miRNA:   3'- -CCCGCa----CCCGG---AG-CCgGUGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 27085 0.66 0.594006
Target:  5'- aGGGCGcGGcGCa--GGgCGCGCGUgucgCCCg -3'
miRNA:   3'- -CCCGCaCC-CGgagCCgGUGCGCA----GGG- -5'
29380 3' -64 NC_006151.1 + 27352 0.72 0.259565
Target:  5'- gGGGuCGUGGGCCggGGCCcggGCGgGUCg- -3'
miRNA:   3'- -CCC-GCACCCGGagCCGG---UGCgCAGgg -5'
29380 3' -64 NC_006151.1 + 28283 0.77 0.121725
Target:  5'- gGGGaCGcGGGCC-CGGCUcccccauuggccgGCGCGUCCCc -3'
miRNA:   3'- -CCC-GCaCCCGGaGCCGG-------------UGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 28531 0.71 0.29707
Target:  5'- cGGGCGUccGGGaCCggccaaugggggagcCGuGCC-CGCGUCCCg -3'
miRNA:   3'- -CCCGCA--CCC-GGa--------------GC-CGGuGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 28812 0.69 0.389787
Target:  5'- cGGGCGUccGGGaC-CGGCCAaUGCGggCCCc -3'
miRNA:   3'- -CCCGCA--CCCgGaGCCGGU-GCGCa-GGG- -5'
29380 3' -64 NC_006151.1 + 28843 0.77 0.121725
Target:  5'- gGGGaCGcGGGCC-CGGCUcccccauuggccgGCGCGUCCCc -3'
miRNA:   3'- -CCC-GCaCCCGGaGCCGG-------------UGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 29069 0.73 0.226533
Target:  5'- cGGCGccgcGGGCCccgagaCGGCCGCGgcgacCGUCCCg -3'
miRNA:   3'- cCCGCa---CCCGGa-----GCCGGUGC-----GCAGGG- -5'
29380 3' -64 NC_006151.1 + 29206 0.7 0.356869
Target:  5'- gGGGCGcggcgggguggggaUGGGUCaccgccgggUCGGCCGCGC--CCCg -3'
miRNA:   3'- -CCCGC--------------ACCCGG---------AGCCGGUGCGcaGGG- -5'
29380 3' -64 NC_006151.1 + 30642 0.67 0.491381
Target:  5'- uGGGUGggggaggGGGUUgauGGCCGCGCugGUUCCg -3'
miRNA:   3'- -CCCGCa------CCCGGag-CCGGUGCG--CAGGG- -5'
29380 3' -64 NC_006151.1 + 31259 0.71 0.316325
Target:  5'- cGGGCGagccgGGGCCccCGGCC-CGC-UCCa -3'
miRNA:   3'- -CCCGCa----CCCGGa-GCCGGuGCGcAGGg -5'
29380 3' -64 NC_006151.1 + 31671 0.68 0.438909
Target:  5'- aGGGCGgaggaaGGGCCg-GGCCGC-CGagCCg -3'
miRNA:   3'- -CCCGCa-----CCCGGagCCGGUGcGCagGG- -5'
29380 3' -64 NC_006151.1 + 31729 0.67 0.53722
Target:  5'- gGGGCGUGGagaggcGCC-CGcGCCggggACGCG-CCUg -3'
miRNA:   3'- -CCCGCACC------CGGaGC-CGG----UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 33897 0.85 0.032849
Target:  5'- gGGGCGgGGGCCUCGcGCCucCGCGUCCg -3'
miRNA:   3'- -CCCGCaCCCGGAGC-CGGu-GCGCAGGg -5'
29380 3' -64 NC_006151.1 + 35079 0.69 0.389787
Target:  5'- cGGGgGUGGGUCgCGuGCCGagcaugcgccuCGCG-CCCg -3'
miRNA:   3'- -CCCgCACCCGGaGC-CGGU-----------GCGCaGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.