miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 120314 0.69 0.397722
Target:  5'- cGGGCucGGGCagccuCUCGgacGCCGCGCGcgCCCg -3'
miRNA:   3'- -CCCGcaCCCG-----GAGC---CGGUGCGCa-GGG- -5'
29380 3' -64 NC_006151.1 + 119439 0.72 0.277506
Target:  5'- cGGGCacguucGUGGGCCgCGGCgACGUGgacgCCg -3'
miRNA:   3'- -CCCG------CACCCGGaGCCGgUGCGCa---GGg -5'
29380 3' -64 NC_006151.1 + 119376 0.68 0.463885
Target:  5'- uGGCGUGcGGCUUCuGCCcgcagcugcuggcGCGCGUgCUg -3'
miRNA:   3'- cCCGCAC-CCGGAGcCGG-------------UGCGCAgGG- -5'
29380 3' -64 NC_006151.1 + 118888 0.66 0.585403
Target:  5'- cGGCGgcgacgcggccgccgGcGGCCUCGagcGCCGCaugGCGUCCg -3'
miRNA:   3'- cCCGCa--------------C-CCGGAGC---CGGUG---CGCAGGg -5'
29380 3' -64 NC_006151.1 + 117787 0.66 0.546574
Target:  5'- cGGGCGgGGcGCCacgccCGGCgGgGCGgggCCCc -3'
miRNA:   3'- -CCCGCaCC-CGGa----GCCGgUgCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 117331 0.7 0.344404
Target:  5'- cGGCGUcGGCCUCGGCCu--UG-CCCa -3'
miRNA:   3'- cCCGCAcCCGGAGCCGGugcGCaGGG- -5'
29380 3' -64 NC_006151.1 + 117261 0.7 0.374231
Target:  5'- aGGCGcGGGCCgcgcgCGGCCGC-CG-CCg -3'
miRNA:   3'- cCCGCaCCCGGa----GCCGGUGcGCaGGg -5'
29380 3' -64 NC_006151.1 + 117198 0.69 0.396924
Target:  5'- gGGGCGUcguaguaguagacGGGCg-CGGCgucgacgacgCGCGCGUCCa -3'
miRNA:   3'- -CCCGCA-------------CCCGgaGCCG----------GUGCGCAGGg -5'
29380 3' -64 NC_006151.1 + 116854 0.68 0.46476
Target:  5'- cGGCGgcgGGGaa--GGCCGCGuCGUCgCCg -3'
miRNA:   3'- cCCGCa--CCCggagCCGGUGC-GCAG-GG- -5'
29380 3' -64 NC_006151.1 + 115135 0.77 0.128138
Target:  5'- -cGCGUGcGCCUCGGCCagcACGCG-CCCg -3'
miRNA:   3'- ccCGCACcCGGAGCCGG---UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 114913 0.67 0.482427
Target:  5'- cGGGCGcacGGCCcCGGCguCGCG-CUCg -3'
miRNA:   3'- -CCCGCac-CCGGaGCCGguGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 114861 0.72 0.253227
Target:  5'- aGGCG-GGGuCCUCGGCCAgGuCGcugacgagcagcuUCCCg -3'
miRNA:   3'- cCCGCaCCC-GGAGCCGGUgC-GC-------------AGGG- -5'
29380 3' -64 NC_006151.1 + 114680 0.71 0.296422
Target:  5'- -cGCGaaGGCCUCGuGCUcgaaggGCGCGUCCCc -3'
miRNA:   3'- ccCGCacCCGGAGC-CGG------UGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 114223 0.73 0.242581
Target:  5'- -cGCGUGuuccuGGCCUCgguGGCCGCGCGggaCCCc -3'
miRNA:   3'- ccCGCAC-----CCGGAG---CCGGUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 114095 0.73 0.23178
Target:  5'- uGGGCuacuaccUGGGCCUCGGCgGCuGCuGcCCCa -3'
miRNA:   3'- -CCCGc------ACCCGGAGCCGgUG-CG-CaGGG- -5'
29380 3' -64 NC_006151.1 + 113108 0.67 0.53722
Target:  5'- gGGGCG-GGGCCgcggacgCGgacGCCGC-CGggCCCg -3'
miRNA:   3'- -CCCGCaCCCGGa------GC---CGGUGcGCa-GGG- -5'
29380 3' -64 NC_006151.1 + 112258 0.67 0.526997
Target:  5'- -cGUGUGGGCCagauaauUUaGCUugGCGUCCg -3'
miRNA:   3'- ccCGCACCCGG-------AGcCGGugCGCAGGg -5'
29380 3' -64 NC_006151.1 + 111281 0.72 0.286211
Target:  5'- cGGGCGggggguacGcGGCCUggcccacgaacgcggCGGCCGCGUG-CCCg -3'
miRNA:   3'- -CCCGCa-------C-CCGGA---------------GCCGGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 110982 0.69 0.4139
Target:  5'- -cGCGUGcGCCUCGGCCGCauccaucuGCaGcCCCg -3'
miRNA:   3'- ccCGCACcCGGAGCCGGUG--------CG-CaGGG- -5'
29380 3' -64 NC_006151.1 + 109949 0.75 0.159296
Target:  5'- uGGGC---GGCCUCGGCCGCGUcuggCCCa -3'
miRNA:   3'- -CCCGcacCCGGAGCCGGUGCGca--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.