miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 106481 0.66 0.594006
Target:  5'- uGGGCGcacacggagacGGGCCagCGGCUggcGCGCG-CCg -3'
miRNA:   3'- -CCCGCa----------CCCGGa-GCCGG---UGCGCaGGg -5'
29380 3' -64 NC_006151.1 + 105689 0.78 0.113359
Target:  5'- cGGCGcgGGGCCgacgccggcgCGGCCGCGCGcCUCg -3'
miRNA:   3'- cCCGCa-CCCGGa---------GCCGGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 104460 0.66 0.553152
Target:  5'- -cGcCGUGGGCUUCgucggggcggacauGGCgCACGUGcCCCg -3'
miRNA:   3'- ccC-GCACCCGGAG--------------CCG-GUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 103826 0.67 0.538153
Target:  5'- uGGCG-GcGGCCguggagaugcucgggCGGCUGCGCGcgcagCCCg -3'
miRNA:   3'- cCCGCaC-CCGGa--------------GCCGGUGCGCa----GGG- -5'
29380 3' -64 NC_006151.1 + 101462 0.69 0.422139
Target:  5'- uGGGCcUGGGCCUCuaccGCCGCGgcgaCGUCg- -3'
miRNA:   3'- -CCCGcACCCGGAGc---CGGUGC----GCAGgg -5'
29380 3' -64 NC_006151.1 + 101166 0.69 0.4139
Target:  5'- cGGCGUGGagGCCgcccugaCGGCCgacgccguggACGCGUgCCu -3'
miRNA:   3'- cCCGCACC--CGGa------GCCGG----------UGCGCAgGG- -5'
29380 3' -64 NC_006151.1 + 100891 0.67 0.527923
Target:  5'- aGGUGcUGcGCCgCGGCgCGCGCGcgCCCg -3'
miRNA:   3'- cCCGC-ACcCGGaGCCG-GUGCGCa-GGG- -5'
29380 3' -64 NC_006151.1 + 100481 0.72 0.277506
Target:  5'- aGGCGcUGGGCCUgcaGGCgCcCGUGUUCCg -3'
miRNA:   3'- cCCGC-ACCCGGAg--CCG-GuGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 100290 0.67 0.482427
Target:  5'- cGGGCGcacGGCCUCcGUCuuCGCG-CCCg -3'
miRNA:   3'- -CCCGCac-CCGGAGcCGGu-GCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 98952 0.7 0.374231
Target:  5'- cGGCGcGGGCCguggacgaggCGGCgCugGUG-CCCg -3'
miRNA:   3'- cCCGCaCCCGGa---------GCCG-GugCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 98359 0.72 0.277506
Target:  5'- cGGGCGUgcgcGGGCuCUgGGCgCGCGCGcugcgCCUg -3'
miRNA:   3'- -CCCGCA----CCCG-GAgCCG-GUGCGCa----GGG- -5'
29380 3' -64 NC_006151.1 + 97375 0.72 0.271418
Target:  5'- cGGGCGcggcggGGGCgUCGGCCu--CGUCCg -3'
miRNA:   3'- -CCCGCa-----CCCGgAGCCGGugcGCAGGg -5'
29380 3' -64 NC_006151.1 + 96153 0.68 0.447436
Target:  5'- -cGCGUcaaaGaCCUCgGGCCACGCGUCCg -3'
miRNA:   3'- ccCGCAc---CcGGAG-CCGGUGCGCAGGg -5'
29380 3' -64 NC_006151.1 + 95439 0.66 0.555978
Target:  5'- uGGCGaGGGCggC-GCCGCGCGUgUCCg -3'
miRNA:   3'- cCCGCaCCCGgaGcCGGUGCGCA-GGG- -5'
29380 3' -64 NC_006151.1 + 93739 0.69 0.381179
Target:  5'- uGGUGgaugcGGGCCUCGucggggcGCgGgGCGUCCCc -3'
miRNA:   3'- cCCGCa----CCCGGAGC-------CGgUgCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 92749 0.66 0.57492
Target:  5'- cGGcGCGgcacGGGCaccugagCGuGCUgcgGCGCGUCCCc -3'
miRNA:   3'- -CC-CGCa---CCCGga-----GC-CGG---UGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 90652 0.69 0.389787
Target:  5'- uGGGCGUguacaugcgcgGGGCggCgGGCCGCuuGUCCCc -3'
miRNA:   3'- -CCCGCA-----------CCCGgaG-CCGGUGcgCAGGG- -5'
29380 3' -64 NC_006151.1 + 88727 0.7 0.341517
Target:  5'- cGGCGUccGCCgCGGCCACGCGcacggacaccucgCCCg -3'
miRNA:   3'- cCCGCAccCGGaGCCGGUGCGCa------------GGG- -5'
29380 3' -64 NC_006151.1 + 88308 0.76 0.142597
Target:  5'- gGGGCGcaGGGCCUCggagaagcgcugcgaGGCCACGCuGUCgCg -3'
miRNA:   3'- -CCCGCa-CCCGGAG---------------CCGGUGCG-CAGgG- -5'
29380 3' -64 NC_006151.1 + 87339 0.76 0.141224
Target:  5'- cGGGCcugccGGGCCUCcagGGCCugGCGgccCCCg -3'
miRNA:   3'- -CCCGca---CCCGGAG---CCGGugCGCa--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.