miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 36332 0.7 0.366612
Target:  5'- cGGGcCGgcuccGGGCCcCGGCCGC-CGaCCCc -3'
miRNA:   3'- -CCC-GCa----CCCGGaGCCGGUGcGCaGGG- -5'
29380 3' -64 NC_006151.1 + 36384 0.67 0.500412
Target:  5'- aGGcCG-GGGCCcccggCGGCCccggGCGCucGUCCCc -3'
miRNA:   3'- cCC-GCaCCCGGa----GCCGG----UGCG--CAGGG- -5'
29380 3' -64 NC_006151.1 + 36731 0.66 0.594006
Target:  5'- aGGCGgcucgauCCUCGGCCGCuugGCG-CCCg -3'
miRNA:   3'- cCCGCaccc---GGAGCCGGUG---CGCaGGG- -5'
29380 3' -64 NC_006151.1 + 37940 0.66 0.594006
Target:  5'- -cGCGca-GCC-CGGCCGCGUGcCCCg -3'
miRNA:   3'- ccCGCaccCGGaGCCGGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 39294 0.67 0.509515
Target:  5'- cGGCGcGGGaCCUCGGCUuCGCcggCgCCg -3'
miRNA:   3'- cCCGCaCCC-GGAGCCGGuGCGca-G-GG- -5'
29380 3' -64 NC_006151.1 + 39525 0.66 0.594006
Target:  5'- --uCGUGGGCC-CGGCC-UGCuucgCCCg -3'
miRNA:   3'- cccGCACCCGGaGCCGGuGCGca--GGG- -5'
29380 3' -64 NC_006151.1 + 40074 0.67 0.527923
Target:  5'- -cGCGgGGGCCUCGGgCGC-CGgggccggCCCc -3'
miRNA:   3'- ccCGCaCCCGGAGCCgGUGcGCa------GGG- -5'
29380 3' -64 NC_006151.1 + 40413 0.66 0.591136
Target:  5'- cGGCG-GcGGCCUCGGUCcccucggcccggcgGCGCuugccUCCCc -3'
miRNA:   3'- cCCGCaC-CCGGAGCCGG--------------UGCGc----AGGG- -5'
29380 3' -64 NC_006151.1 + 40582 0.7 0.344404
Target:  5'- cGGCGgaGGG-CUCGGCgGCGgaggauCGUCCCg -3'
miRNA:   3'- cCCGCa-CCCgGAGCCGgUGC------GCAGGG- -5'
29380 3' -64 NC_006151.1 + 43943 0.67 0.509515
Target:  5'- gGGGCcggGGGCCcucccCGGCCGCccCGaCCCg -3'
miRNA:   3'- -CCCGca-CCCGGa----GCCGGUGc-GCaGGG- -5'
29380 3' -64 NC_006151.1 + 46140 0.72 0.265438
Target:  5'- cGGGUcUGGGUCUCGcGCC-CGCcccagaGUCCCc -3'
miRNA:   3'- -CCCGcACCCGGAGC-CGGuGCG------CAGGG- -5'
29380 3' -64 NC_006151.1 + 49637 0.68 0.438909
Target:  5'- uGGGgGUGGGCCguggaggaggUCGaGCCcuccgggcCGCG-CCCg -3'
miRNA:   3'- -CCCgCACCCGG----------AGC-CGGu-------GCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 50340 0.69 0.40576
Target:  5'- cGGCGccuGGCCgCGGCCucccgcCGCGUCuCCg -3'
miRNA:   3'- cCCGCac-CCGGaGCCGGu-----GCGCAG-GG- -5'
29380 3' -64 NC_006151.1 + 50380 0.7 0.359101
Target:  5'- gGGGCGagacgcGGGCCccgCGGUCcucGCGCGgCCCc -3'
miRNA:   3'- -CCCGCa-----CCCGGa--GCCGG---UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 50820 0.68 0.473552
Target:  5'- -aGCGUccacGCCUCGGcCCGCGCcgccGUCCCc -3'
miRNA:   3'- ccCGCAcc--CGGAGCC-GGUGCG----CAGGG- -5'
29380 3' -64 NC_006151.1 + 51118 0.71 0.309581
Target:  5'- aGGaUGcGGGCCUCGcGCaGgGCGUCCCg -3'
miRNA:   3'- cCC-GCaCCCGGAGC-CGgUgCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 54426 0.68 0.473552
Target:  5'- uGGCGcGGcGCUUCGGCgACgagGCG-CCCg -3'
miRNA:   3'- cCCGCaCC-CGGAGCCGgUG---CGCaGGG- -5'
29380 3' -64 NC_006151.1 + 54604 0.67 0.53722
Target:  5'- cGGCGUGGuCCcggUGcGCCggGCGCGcCCCg -3'
miRNA:   3'- cCCGCACCcGGa--GC-CGG--UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 56317 0.66 0.565429
Target:  5'- cGGUGccugagccUGGGCCggUGGCUggagcgcgcGCGCGcCCCg -3'
miRNA:   3'- cCCGC--------ACCCGGa-GCCGG---------UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 56541 0.66 0.546574
Target:  5'- cGGGUucGGGCCccugcUCGGCCugccgggcgACGCGccgccgCCCg -3'
miRNA:   3'- -CCCGcaCCCGG-----AGCCGG---------UGCGCa-----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.