miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 22272 0.66 0.57492
Target:  5'- cGGGCGggGGGaaggUCGGCgcgggCACGgCGUCCa -3'
miRNA:   3'- -CCCGCa-CCCgg--AGCCG-----GUGC-GCAGGg -5'
29380 3' -64 NC_006151.1 + 66868 0.66 0.57492
Target:  5'- gGGGCGgcgcgaaGGGCgCgccCGGCCcCGCG-CCg -3'
miRNA:   3'- -CCCGCa------CCCG-Ga--GCCGGuGCGCaGGg -5'
29380 3' -64 NC_006151.1 + 84397 0.66 0.578728
Target:  5'- cGGGCGgggagcgggUGGGCgcggugauaaggcggCgcgCGGCgGCGCGcggCCCa -3'
miRNA:   3'- -CCCGC---------ACCCG---------------Ga--GCCGgUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 10290 0.66 0.584448
Target:  5'- aGGCGgcGGGCa-CGuCC-CGCGUCCCc -3'
miRNA:   3'- cCCGCa-CCCGgaGCcGGuGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 81678 0.66 0.584448
Target:  5'- cGGCGguacGCCUCGGCgACG-GUCgCCc -3'
miRNA:   3'- cCCGCacc-CGGAGCCGgUGCgCAG-GG- -5'
29380 3' -64 NC_006151.1 + 84572 0.66 0.584448
Target:  5'- -aGCGaGGGCCUCGa-CGCGCGcCUCg -3'
miRNA:   3'- ccCGCaCCCGGAGCcgGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 19057 0.66 0.584448
Target:  5'- cGGGCGcaGGCaCUCGGgCGCGCG-Cg- -3'
miRNA:   3'- -CCCGCacCCG-GAGCCgGUGCGCaGgg -5'
29380 3' -64 NC_006151.1 + 81571 0.66 0.584448
Target:  5'- uGGuGCGgagcaGGGUCUCG--CGCGCGUCgCCg -3'
miRNA:   3'- -CC-CGCa----CCCGGAGCcgGUGCGCAG-GG- -5'
29380 3' -64 NC_006151.1 + 118888 0.66 0.585403
Target:  5'- cGGCGgcgacgcggccgccgGcGGCCUCGagcGCCGCaugGCGUCCg -3'
miRNA:   3'- cCCGCa--------------C-CCGGAGC---CGGUG---CGCAGGg -5'
29380 3' -64 NC_006151.1 + 31729 0.67 0.53722
Target:  5'- gGGGCGUGGagaggcGCC-CGcGCCggggACGCG-CCUg -3'
miRNA:   3'- -CCCGCACC------CGGaGC-CGG----UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 18492 0.67 0.53722
Target:  5'- -uGCGUGGGCaggcugguguacacCGGCgagagcaUGCGCGUCCCc -3'
miRNA:   3'- ccCGCACCCGga------------GCCG-------GUGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 138530 0.67 0.531635
Target:  5'- gGGGUGaUGGGCgCguacgcCGGCCuggGCGCGUacuacgcgaccgucgCCCg -3'
miRNA:   3'- -CCCGC-ACCCG-Ga-----GCCGG---UGCGCA---------------GGG- -5'
29380 3' -64 NC_006151.1 + 2205 0.67 0.531635
Target:  5'- cGGGCcgGUGGGUCUccacggcgcccccggCGGCgGCGCGgacgcuggUCUCg -3'
miRNA:   3'- -CCCG--CACCCGGA---------------GCCGgUGCGC--------AGGG- -5'
29380 3' -64 NC_006151.1 + 54604 0.67 0.53722
Target:  5'- cGGCGUGGuCCcggUGcGCCggGCGCGcCCCg -3'
miRNA:   3'- cCCGCACCcGGa--GC-CGG--UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 77102 0.67 0.53722
Target:  5'- -aGCGcGGGCgCggCGGgCGCGCG-CCCa -3'
miRNA:   3'- ccCGCaCCCG-Ga-GCCgGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 113108 0.67 0.53722
Target:  5'- gGGGCG-GGGCCgcggacgCGgacGCCGC-CGggCCCg -3'
miRNA:   3'- -CCCGCaCCCGGa------GC---CGGUGcGCa-GGG- -5'
29380 3' -64 NC_006151.1 + 123929 0.67 0.53722
Target:  5'- cGGGCc---GCCUCGGCCuCGCcgacgCCCg -3'
miRNA:   3'- -CCCGcaccCGGAGCCGGuGCGca---GGG- -5'
29380 3' -64 NC_006151.1 + 130962 0.67 0.53722
Target:  5'- cGGGCGcggGGGCCgguacccCGGCCGCcCGggCUg -3'
miRNA:   3'- -CCCGCa--CCCGGa------GCCGGUGcGCa-GGg -5'
29380 3' -64 NC_006151.1 + 139093 0.67 0.53722
Target:  5'- gGGGCGcgcaUGGcGCuguucacgaccCUCGGCgucaCGCGCGcCCCg -3'
miRNA:   3'- -CCCGC----ACC-CG-----------GAGCCG----GUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 130353 0.67 0.527923
Target:  5'- cGGCGUcGuGGUUgaCGGCCGCGCGcgCCg -3'
miRNA:   3'- cCCGCA-C-CCGGa-GCCGGUGCGCa-GGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.