miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 84397 0.66 0.578728
Target:  5'- cGGGCGgggagcgggUGGGCgcggugauaaggcggCgcgCGGCgGCGCGcggCCCa -3'
miRNA:   3'- -CCCGC---------ACCCG---------------Ga--GCCGgUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 106481 0.66 0.594006
Target:  5'- uGGGCGcacacggagacGGGCCagCGGCUggcGCGCG-CCg -3'
miRNA:   3'- -CCCGCa----------CCCGGa-GCCGG---UGCGCaGGg -5'
29380 3' -64 NC_006151.1 + 78394 0.66 0.594006
Target:  5'- gGGGCGgccacgGcGGCuCUCgGGCCGCgaGCGccguggCCCa -3'
miRNA:   3'- -CCCGCa-----C-CCG-GAG-CCGGUG--CGCa-----GGG- -5'
29380 3' -64 NC_006151.1 + 37940 0.66 0.594006
Target:  5'- -cGCGca-GCC-CGGCCGCGUGcCCCg -3'
miRNA:   3'- ccCGCaccCGGaGCCGGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 36731 0.66 0.594006
Target:  5'- aGGCGgcucgauCCUCGGCCGCuugGCG-CCCg -3'
miRNA:   3'- cCCGCaccc---GGAGCCGGUG---CGCaGGG- -5'
29380 3' -64 NC_006151.1 + 60408 0.66 0.594006
Target:  5'- aGGGCGcgcacGGCCcagCGGCC-CaCGUCCUc -3'
miRNA:   3'- -CCCGCac---CCGGa--GCCGGuGcGCAGGG- -5'
29380 3' -64 NC_006151.1 + 27085 0.66 0.594006
Target:  5'- aGGGCGcGGcGCa--GGgCGCGCGUgucgCCCg -3'
miRNA:   3'- -CCCGCaCC-CGgagCCgGUGCGCA----GGG- -5'
29380 3' -64 NC_006151.1 + 17108 0.66 0.594006
Target:  5'- gGGGCGccggGGGCUcCGGCgGCG-GUgCUg -3'
miRNA:   3'- -CCCGCa---CCCGGaGCCGgUGCgCAgGG- -5'
29380 3' -64 NC_006151.1 + 39525 0.66 0.594006
Target:  5'- --uCGUGGGCC-CGGCC-UGCuucgCCCg -3'
miRNA:   3'- cccGCACCCGGaGCCGGuGCGca--GGG- -5'
29380 3' -64 NC_006151.1 + 134480 0.66 0.593049
Target:  5'- cGGCcgccacUGGGCCuacgucuUCGGgCGCuCGUCCCu -3'
miRNA:   3'- cCCGc-----ACCCGG-------AGCCgGUGcGCAGGG- -5'
29380 3' -64 NC_006151.1 + 85178 0.66 0.593049
Target:  5'- cGGGCGccgccgccccgcUGGGCaucgCGGaCCugcuggaGCGgGUCCCc -3'
miRNA:   3'- -CCCGC------------ACCCGga--GCC-GG-------UGCgCAGGG- -5'
29380 3' -64 NC_006151.1 + 22082 0.66 0.593049
Target:  5'- uGGGCGcgguacgUGGGCCgccggugGGCCAC-CGcCUCg -3'
miRNA:   3'- -CCCGC-------ACCCGGag-----CCGGUGcGCaGGG- -5'
29380 3' -64 NC_006151.1 + 40413 0.66 0.591136
Target:  5'- cGGCG-GcGGCCUCGGUCcccucggcccggcgGCGCuugccUCCCc -3'
miRNA:   3'- cCCGCaC-CCGGAGCCGG--------------UGCGc----AGGG- -5'
29380 3' -64 NC_006151.1 + 118888 0.66 0.585403
Target:  5'- cGGCGgcgacgcggccgccgGcGGCCUCGagcGCCGCaugGCGUCCg -3'
miRNA:   3'- cCCGCa--------------C-CCGGAGC---CGGUG---CGCAGGg -5'
29380 3' -64 NC_006151.1 + 81571 0.66 0.584448
Target:  5'- uGGuGCGgagcaGGGUCUCG--CGCGCGUCgCCg -3'
miRNA:   3'- -CC-CGCa----CCCGGAGCcgGUGCGCAG-GG- -5'
29380 3' -64 NC_006151.1 + 19057 0.66 0.584448
Target:  5'- cGGGCGcaGGCaCUCGGgCGCGCG-Cg- -3'
miRNA:   3'- -CCCGCacCCG-GAGCCgGUGCGCaGgg -5'
29380 3' -64 NC_006151.1 + 84572 0.66 0.584448
Target:  5'- -aGCGaGGGCCUCGa-CGCGCGcCUCg -3'
miRNA:   3'- ccCGCaCCCGGAGCcgGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 81678 0.66 0.584448
Target:  5'- cGGCGguacGCCUCGGCgACG-GUCgCCc -3'
miRNA:   3'- cCCGCacc-CGGAGCCGgUGCgCAG-GG- -5'
29380 3' -64 NC_006151.1 + 10290 0.66 0.584448
Target:  5'- aGGCGgcGGGCa-CGuCC-CGCGUCCCc -3'
miRNA:   3'- cCCGCa-CCCGgaGCcGGuGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 66868 0.66 0.57492
Target:  5'- gGGGCGgcgcgaaGGGCgCgccCGGCCcCGCG-CCg -3'
miRNA:   3'- -CCCGCa------CCCG-Ga--GCCGGuGCGCaGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.