miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 732 0.74 0.197133
Target:  5'- cGGGCGgGGGCUUCcGCUcCGCGgcgCCCg -3'
miRNA:   3'- -CCCGCaCCCGGAGcCGGuGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 25209 0.74 0.201791
Target:  5'- uGGGCGU-GGCCUCGGCgGagcCGCGaCCUc -3'
miRNA:   3'- -CCCGCAcCCGGAGCCGgU---GCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 137012 0.74 0.211394
Target:  5'- cGGCGcUGGGCgcccugCUCGGCCugccggACGCGUgCCCc -3'
miRNA:   3'- cCCGC-ACCCG------GAGCCGG------UGCGCA-GGG- -5'
29380 3' -64 NC_006151.1 + 29069 0.73 0.226533
Target:  5'- cGGCGccgcGGGCCccgagaCGGCCGCGgcgacCGUCCCg -3'
miRNA:   3'- cCCGCa---CCCGGa-----GCCGGUGC-----GCAGGG- -5'
29380 3' -64 NC_006151.1 + 130714 0.73 0.226533
Target:  5'- gGGGCGgcccggGGGCCcgcgCGGCCGCgGCGcagcgccaCCCa -3'
miRNA:   3'- -CCCGCa-----CCCGGa---GCCGGUG-CGCa-------GGG- -5'
29380 3' -64 NC_006151.1 + 114095 0.73 0.23178
Target:  5'- uGGGCuacuaccUGGGCCUCGGCgGCuGCuGcCCCa -3'
miRNA:   3'- -CCCGc------ACCCGGAGCCGgUG-CG-CaGGG- -5'
29380 3' -64 NC_006151.1 + 141740 0.73 0.23178
Target:  5'- aGGGCGgagGGGCgCg-GGgCGCGCGcCCCg -3'
miRNA:   3'- -CCCGCa--CCCG-GagCCgGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 141271 0.73 0.23178
Target:  5'- -cGCG-GGGCCUCGGCgGCuGCgGUCCg -3'
miRNA:   3'- ccCGCaCCCGGAGCCGgUG-CG-CAGGg -5'
29380 3' -64 NC_006151.1 + 65091 0.73 0.237129
Target:  5'- -cGCGUGGGCC--GGUCGCGCGcaugCCCc -3'
miRNA:   3'- ccCGCACCCGGagCCGGUGCGCa---GGG- -5'
29380 3' -64 NC_006151.1 + 114223 0.73 0.242581
Target:  5'- -cGCGUGuuccuGGCCUCgguGGCCGCGCGggaCCCc -3'
miRNA:   3'- ccCGCAC-----CCGGAG---CCGGUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 124682 0.72 0.247577
Target:  5'- -cGCGaggGGGCCcacggggagcacaUCGGCUACGCG-CCCg -3'
miRNA:   3'- ccCGCa--CCCGG-------------AGCCGGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 64231 0.72 0.248137
Target:  5'- cGGCGUacaGGGCCgcgaCGGCgGCGCGggCCa -3'
miRNA:   3'- cCCGCA---CCCGGa---GCCGgUGCGCagGG- -5'
29380 3' -64 NC_006151.1 + 59297 0.72 0.248137
Target:  5'- cGGCGUGGcGCCcgCGGCUcaGCGgG-CCCg -3'
miRNA:   3'- cCCGCACC-CGGa-GCCGG--UGCgCaGGG- -5'
29380 3' -64 NC_006151.1 + 64498 0.72 0.248137
Target:  5'- cGGGCGcGGGCggCGGgCGCGCGcCgCCa -3'
miRNA:   3'- -CCCGCaCCCGgaGCCgGUGCGCaG-GG- -5'
29380 3' -64 NC_006151.1 + 114861 0.72 0.253227
Target:  5'- aGGCG-GGGuCCUCGGCCAgGuCGcugacgagcagcuUCCCg -3'
miRNA:   3'- cCCGCaCCC-GGAGCCGGUgC-GC-------------AGGG- -5'
29380 3' -64 NC_006151.1 + 131105 0.72 0.259565
Target:  5'- cGGCGggGGGCC-CGGCCgcgGCGCGggaggCCg -3'
miRNA:   3'- cCCGCa-CCCGGaGCCGG---UGCGCa----GGg -5'
29380 3' -64 NC_006151.1 + 78698 0.72 0.259565
Target:  5'- cGGcCG-GGGCCUCGucGCCGCGaCGgcgCCCg -3'
miRNA:   3'- cCC-GCaCCCGGAGC--CGGUGC-GCa--GGG- -5'
29380 3' -64 NC_006151.1 + 27352 0.72 0.259565
Target:  5'- gGGGuCGUGGGCCggGGCCcggGCGgGUCg- -3'
miRNA:   3'- -CCC-GCACCCGGagCCGG---UGCgCAGgg -5'
29380 3' -64 NC_006151.1 + 74016 0.72 0.259565
Target:  5'- gGGGCGUcGuGCgCUCGGCCAUGUucGUCaCCg -3'
miRNA:   3'- -CCCGCAcC-CG-GAGCCGGUGCG--CAG-GG- -5'
29380 3' -64 NC_006151.1 + 46140 0.72 0.265438
Target:  5'- cGGGUcUGGGUCUCGcGCC-CGCcccagaGUCCCc -3'
miRNA:   3'- -CCCGcACCCGGAGC-CGGuGCG------CAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.