miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 133167 1.13 0.000326
Target:  5'- cGGGCGUGGGCCUCGGCCACGCGUCCCa -3'
miRNA:   3'- -CCCGCACCCGGAGCCGGUGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 33897 0.85 0.032849
Target:  5'- gGGGCGgGGGCCUCGcGCCucCGCGUCCg -3'
miRNA:   3'- -CCCGCaCCCGGAGC-CGGu-GCGCAGGg -5'
29380 3' -64 NC_006151.1 + 26351 0.78 0.100186
Target:  5'- gGGGCGgcggcGGGCCgcgUCgGGgCGCGCGUCCCc -3'
miRNA:   3'- -CCCGCa----CCCGG---AG-CCgGUGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 23899 0.78 0.110601
Target:  5'- cGGGC-UGGGCgUCGGUCGCGgG-CCCg -3'
miRNA:   3'- -CCCGcACCCGgAGCCGGUGCgCaGGG- -5'
29380 3' -64 NC_006151.1 + 105689 0.78 0.113359
Target:  5'- cGGCGcgGGGCCgacgccggcgCGGCCGCGCGcCUCg -3'
miRNA:   3'- cCCGCa-CCCGGa---------GCCGGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 28843 0.77 0.121725
Target:  5'- gGGGaCGcGGGCC-CGGCUcccccauuggccgGCGCGUCCCc -3'
miRNA:   3'- -CCC-GCaCCCGGaGCCGG-------------UGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 28283 0.77 0.121725
Target:  5'- gGGGaCGcGGGCC-CGGCUcccccauuggccgGCGCGUCCCc -3'
miRNA:   3'- -CCC-GCaCCCGGaGCCGG-------------UGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 115135 0.77 0.128138
Target:  5'- -cGCGUGcGCCUCGGCCagcACGCG-CCCg -3'
miRNA:   3'- ccCGCACcCGGAGCCGG---UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 77522 0.76 0.137508
Target:  5'- uGGCGc--GCCUCGGCCGCGCGUgggccgcCCCg -3'
miRNA:   3'- cCCGCaccCGGAGCCGGUGCGCA-------GGG- -5'
29380 3' -64 NC_006151.1 + 87339 0.76 0.141224
Target:  5'- cGGGCcugccGGGCCUCcagGGCCugGCGgccCCCg -3'
miRNA:   3'- -CCCGca---CCCGGAG---CCGGugCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 88308 0.76 0.142597
Target:  5'- gGGGCGcaGGGCCUCggagaagcgcugcgaGGCCACGCuGUCgCg -3'
miRNA:   3'- -CCCGCa-CCCGGAG---------------CCGGUGCG-CAGgG- -5'
29380 3' -64 NC_006151.1 + 60639 0.76 0.144681
Target:  5'- gGGGCG-GGGCUccCGGCCcgcgcCGCGUCCUc -3'
miRNA:   3'- -CCCGCaCCCGGa-GCCGGu----GCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 109949 0.75 0.159296
Target:  5'- uGGGC---GGCCUCGGCCGCGUcuggCCCa -3'
miRNA:   3'- -CCCGcacCCGGAGCCGGUGCGca--GGG- -5'
29380 3' -64 NC_006151.1 + 65699 0.75 0.168694
Target:  5'- cGGGCGcgggaucagguaggGGGCCUcgcgCGGCUGCGCGcggCCCa -3'
miRNA:   3'- -CCCGCa-------------CCCGGA----GCCGGUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 57289 0.75 0.179431
Target:  5'- aGGGCGUccagcGcGGCCUUGGCgGCGCGgCCg -3'
miRNA:   3'- -CCCGCA-----C-CCGGAGCCGgUGCGCaGGg -5'
29380 3' -64 NC_006151.1 + 21443 0.75 0.18372
Target:  5'- cGGCGUGGGguggcCCcCGGCgGCGUgGUCCCg -3'
miRNA:   3'- cCCGCACCC-----GGaGCCGgUGCG-CAGGG- -5'
29380 3' -64 NC_006151.1 + 21553 0.75 0.185461
Target:  5'- gGGGCcUGGGCCUCggcgagcccgccgagGGCCGCGCGgggUCg -3'
miRNA:   3'- -CCCGcACCCGGAG---------------CCGGUGCGCa--GGg -5'
29380 3' -64 NC_006151.1 + 57239 0.74 0.188099
Target:  5'- cGGcGCGcGcGGCCUCGGCgucCGCGCGgCCCu -3'
miRNA:   3'- -CC-CGCaC-CCGGAGCCG---GUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 4798 0.74 0.192119
Target:  5'- cGGcGCGguagcGGGCCgCGGCCugGCGgacgucguccucgUCCCa -3'
miRNA:   3'- -CC-CGCa----CCCGGaGCCGGugCGC-------------AGGG- -5'
29380 3' -64 NC_006151.1 + 125199 0.74 0.197133
Target:  5'- cGGcGuCGUGGGCCccgCGGCCccCGCGgccgCCCg -3'
miRNA:   3'- -CC-C-GCACCCGGa--GCCGGu-GCGCa---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.