miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 732 0.74 0.197133
Target:  5'- cGGGCGgGGGCUUCcGCUcCGCGgcgCCCg -3'
miRNA:   3'- -CCCGCaCCCGGAGcCGGuGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 2205 0.67 0.531635
Target:  5'- cGGGCcgGUGGGUCUccacggcgcccccggCGGCgGCGCGgacgcuggUCUCg -3'
miRNA:   3'- -CCCG--CACCCGGA---------------GCCGgUGCGC--------AGGG- -5'
29380 3' -64 NC_006151.1 + 2284 0.68 0.447436
Target:  5'- cGGCGgGGcGCCcgCGGCgGCGaCGgcgCCCg -3'
miRNA:   3'- cCCGCaCC-CGGa-GCCGgUGC-GCa--GGG- -5'
29380 3' -64 NC_006151.1 + 2459 0.71 0.290007
Target:  5'- gGGGCGccGaGCCcccagcggUUGGCCGCGCGgugCCCg -3'
miRNA:   3'- -CCCGCacC-CGG--------AGCCGGUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 3118 0.68 0.430476
Target:  5'- cGGCGcGGGUCccaGGCCggGCGCGgggcgCCCu -3'
miRNA:   3'- cCCGCaCCCGGag-CCGG--UGCGCa----GGG- -5'
29380 3' -64 NC_006151.1 + 3411 0.67 0.482427
Target:  5'- cGGcGUGUGGGUCUcgcCGGCCgggACGCGgcggaagCCg -3'
miRNA:   3'- -CC-CGCACCCGGA---GCCGG---UGCGCa------GGg -5'
29380 3' -64 NC_006151.1 + 3455 0.71 0.309581
Target:  5'- cGGGCGcgGGGUgCUCGGgCAUGgG-CCCg -3'
miRNA:   3'- -CCCGCa-CCCG-GAGCCgGUGCgCaGGG- -5'
29380 3' -64 NC_006151.1 + 3681 0.71 0.302946
Target:  5'- gGGGCGgcGGGCCcCGGgCGCGCGgcgCUUc -3'
miRNA:   3'- -CCCGCa-CCCGGaGCCgGUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 3944 0.71 0.296422
Target:  5'- cGGGCGcgggcuccgcGGGCC-CgGGCCGCGCGgcggCCUc -3'
miRNA:   3'- -CCCGCa---------CCCGGaG-CCGGUGCGCa---GGG- -5'
29380 3' -64 NC_006151.1 + 4050 0.68 0.430476
Target:  5'- cGGGCGcGGGCCcCGuCCACGCuGUagcgcaCCa -3'
miRNA:   3'- -CCCGCaCCCGGaGCcGGUGCG-CAg-----GG- -5'
29380 3' -64 NC_006151.1 + 4362 0.68 0.430476
Target:  5'- cGGGCGcagaGGGCCUCGaCgGuCGCcUCCCc -3'
miRNA:   3'- -CCCGCa---CCCGGAGCcGgU-GCGcAGGG- -5'
29380 3' -64 NC_006151.1 + 4524 0.72 0.283702
Target:  5'- aGGGCccagagcGGGUCcugggCGGCCAUGgCGUCCCc -3'
miRNA:   3'- -CCCGca-----CCCGGa----GCCGGUGC-GCAGGG- -5'
29380 3' -64 NC_006151.1 + 4725 0.67 0.518687
Target:  5'- aGGCGcacgaGGGCCUCGuGCUGCuuccucgaGUCCCc -3'
miRNA:   3'- cCCGCa----CCCGGAGC-CGGUGcg------CAGGG- -5'
29380 3' -64 NC_006151.1 + 4798 0.74 0.192119
Target:  5'- cGGcGCGguagcGGGCCgCGGCCugGCGgacgucguccucgUCCCa -3'
miRNA:   3'- -CC-CGCa----CCCGGaGCCGGugCGC-------------AGGG- -5'
29380 3' -64 NC_006151.1 + 4952 0.67 0.509515
Target:  5'- cGGCGgGGGCCcgUCGGCCAUgaGCGa--- -3'
miRNA:   3'- cCCGCaCCCGG--AGCCGGUG--CGCaggg -5'
29380 3' -64 NC_006151.1 + 5731 0.68 0.447436
Target:  5'- uGGCGccgGGGUCcgaGGCCGCGCcgccggCCCg -3'
miRNA:   3'- cCCGCa--CCCGGag-CCGGUGCGca----GGG- -5'
29380 3' -64 NC_006151.1 + 6158 0.71 0.290007
Target:  5'- cGGCGgccucGGCCUCGGCgGCGuCGUCg- -3'
miRNA:   3'- cCCGCac---CCGGAGCCGgUGC-GCAGgg -5'
29380 3' -64 NC_006151.1 + 7163 0.69 0.381956
Target:  5'- cGGGCGcGaGGCgcaugCUCGG-CACGCGaCCCa -3'
miRNA:   3'- -CCCGCaC-CCG-----GAGCCgGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 8239 0.68 0.438909
Target:  5'- cGGCGgggaGGGCCg-GGCCGgCGCG-CCg -3'
miRNA:   3'- cCCGCa---CCCGGagCCGGU-GCGCaGGg -5'
29380 3' -64 NC_006151.1 + 8328 0.69 0.387427
Target:  5'- gGGGCGcgcGGGCCUCGaucgcGCCcgccggacgcggagGCGCGaggCCCc -3'
miRNA:   3'- -CCCGCa--CCCGGAGC-----CGG--------------UGCGCa--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.