miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 141740 0.73 0.23178
Target:  5'- aGGGCGgagGGGCgCg-GGgCGCGCGcCCCg -3'
miRNA:   3'- -CCCGCa--CCCG-GagCCgGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 141628 0.69 0.397722
Target:  5'- cGGGCG-GGucgcuGCCgCGGCgGCGCGgcggggCCCc -3'
miRNA:   3'- -CCCGCaCC-----CGGaGCCGgUGCGCa-----GGG- -5'
29380 3' -64 NC_006151.1 + 141425 0.7 0.330145
Target:  5'- cGGGCGc-GGCC-CGGCgcgaACGaCGUCCCc -3'
miRNA:   3'- -CCCGCacCCGGaGCCGg---UGC-GCAGGG- -5'
29380 3' -64 NC_006151.1 + 141380 0.66 0.565429
Target:  5'- cGGGgGcGGGCCcCGGgCaaacagcgGCGUGUCCg -3'
miRNA:   3'- -CCCgCaCCCGGaGCCgG--------UGCGCAGGg -5'
29380 3' -64 NC_006151.1 + 141271 0.73 0.23178
Target:  5'- -cGCG-GGGCCUCGGCgGCuGCgGUCCg -3'
miRNA:   3'- ccCGCaCCCGGAGCCGgUG-CG-CAGGg -5'
29380 3' -64 NC_006151.1 + 139646 0.67 0.500412
Target:  5'- cGGCGcggGGGUCgCGGCgGgCGCGccgCCCg -3'
miRNA:   3'- cCCGCa--CCCGGaGCCGgU-GCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 139093 0.67 0.53722
Target:  5'- gGGGCGcgcaUGGcGCuguucacgaccCUCGGCgucaCGCGCGcCCCg -3'
miRNA:   3'- -CCCGC----ACC-CG-----------GAGCCG----GUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 138530 0.67 0.531635
Target:  5'- gGGGUGaUGGGCgCguacgcCGGCCuggGCGCGUacuacgcgaccgucgCCCg -3'
miRNA:   3'- -CCCGC-ACCCG-Ga-----GCCGG---UGCGCA---------------GGG- -5'
29380 3' -64 NC_006151.1 + 138333 0.66 0.565429
Target:  5'- -----cGGGCC-CGGCaCGCGCGcagCCCg -3'
miRNA:   3'- cccgcaCCCGGaGCCG-GUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 137618 0.68 0.433838
Target:  5'- cGGGCG-GGGaCCcCGGCgccuccgcccucgucCGCGCccccGUCCCg -3'
miRNA:   3'- -CCCGCaCCC-GGaGCCG---------------GUGCG----CAGGG- -5'
29380 3' -64 NC_006151.1 + 137525 0.66 0.565429
Target:  5'- cGGGCGacgaggacUGGGCggaCUgGGaCgCGgGCGUCCCc -3'
miRNA:   3'- -CCCGC--------ACCCG---GAgCC-G-GUgCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 137012 0.74 0.211394
Target:  5'- cGGCGcUGGGCgcccugCUCGGCCugccggACGCGUgCCCc -3'
miRNA:   3'- cCCGC-ACCCG------GAGCCGG------UGCGCA-GGG- -5'
29380 3' -64 NC_006151.1 + 135498 0.71 0.302946
Target:  5'- cGGCGcGcGGCCUCGGCCGaggccaucaCGUCCUc -3'
miRNA:   3'- cCCGCaC-CCGGAGCCGGUgc-------GCAGGG- -5'
29380 3' -64 NC_006151.1 + 135091 0.66 0.555978
Target:  5'- gGGGCGgcgGGGCCgggcgggCGGCgguagCGCGCGg--- -3'
miRNA:   3'- -CCCGCa--CCCGGa------GCCG-----GUGCGCaggg -5'
29380 3' -64 NC_006151.1 + 135012 0.71 0.309581
Target:  5'- gGGGCGcggggGGGCagcagcggGGCCGCGuCGUCCUc -3'
miRNA:   3'- -CCCGCa----CCCGgag-----CCGGUGC-GCAGGG- -5'
29380 3' -64 NC_006151.1 + 134790 0.71 0.290007
Target:  5'- cGGGCcuGUGaGGCCgcggCGGCC-CGCGccggaCCCg -3'
miRNA:   3'- -CCCG--CAC-CCGGa---GCCGGuGCGCa----GGG- -5'
29380 3' -64 NC_006151.1 + 134480 0.66 0.593049
Target:  5'- cGGCcgccacUGGGCCuacgucuUCGGgCGCuCGUCCCu -3'
miRNA:   3'- cCCGc-----ACCCGG-------AGCCgGUGcGCAGGG- -5'
29380 3' -64 NC_006151.1 + 133663 0.66 0.546574
Target:  5'- aGGCGcu-GCCggcgCGGCgGCGCGcCCCc -3'
miRNA:   3'- cCCGCaccCGGa---GCCGgUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 133616 0.67 0.509515
Target:  5'- gGGGCGUcuggGGGUCgcggCGGCCgGgGCGguggUCCg -3'
miRNA:   3'- -CCCGCA----CCCGGa---GCCGG-UgCGCa---GGG- -5'
29380 3' -64 NC_006151.1 + 133167 1.13 0.000326
Target:  5'- cGGGCGUGGGCCUCGGCCACGCGUCCCa -3'
miRNA:   3'- -CCCGCACCCGGAGCCGGUGCGCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.