miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 132853 0.72 0.277506
Target:  5'- cGGGCGgccGGCCcggGGCCGCGCccCCCa -3'
miRNA:   3'- -CCCGCac-CCGGag-CCGGUGCGcaGGG- -5'
29380 3' -64 NC_006151.1 + 131105 0.72 0.259565
Target:  5'- cGGCGggGGGCC-CGGCCgcgGCGCGggaggCCg -3'
miRNA:   3'- cCCGCa-CCCGGaGCCGG---UGCGCa----GGg -5'
29380 3' -64 NC_006151.1 + 130962 0.67 0.53722
Target:  5'- cGGGCGcggGGGCCgguacccCGGCCGCcCGggCUg -3'
miRNA:   3'- -CCCGCa--CCCGGa------GCCGGUGcGCa-GGg -5'
29380 3' -64 NC_006151.1 + 130714 0.73 0.226533
Target:  5'- gGGGCGgcccggGGGCCcgcgCGGCCGCgGCGcagcgccaCCCa -3'
miRNA:   3'- -CCCGCa-----CCCGGa---GCCGGUG-CGCa-------GGG- -5'
29380 3' -64 NC_006151.1 + 130521 0.68 0.438909
Target:  5'- cGGGCGcGGGCgUCGcGUaCACGCc-CCCg -3'
miRNA:   3'- -CCCGCaCCCGgAGC-CG-GUGCGcaGGG- -5'
29380 3' -64 NC_006151.1 + 130475 0.7 0.336507
Target:  5'- aGGGCGaUGGccuGCCgcagCGcgcggcgccacacGCCGCGCGUCUCg -3'
miRNA:   3'- -CCCGC-ACC---CGGa---GC-------------CGGUGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 130353 0.67 0.527923
Target:  5'- cGGCGUcGuGGUUgaCGGCCGCGCGcgCCg -3'
miRNA:   3'- cCCGCA-C-CCGGa-GCCGGUGCGCa-GGg -5'
29380 3' -64 NC_006151.1 + 129795 0.71 0.288104
Target:  5'- cGGCGUGGGCCcgcaugaGGCCcgugagcgcggagcGCGCGgcggcguagCCCa -3'
miRNA:   3'- cCCGCACCCGGag-----CCGG--------------UGCGCa--------GGG- -5'
29380 3' -64 NC_006151.1 + 129447 0.67 0.500412
Target:  5'- uGGGCG-GGGCgCaCGGCCGuggGCGggacgagCCCg -3'
miRNA:   3'- -CCCGCaCCCG-GaGCCGGUg--CGCa------GGG- -5'
29380 3' -64 NC_006151.1 + 127385 0.71 0.309581
Target:  5'- gGGGUGgcggGGGCCgCGGCCGaguCGaCGggagCCCg -3'
miRNA:   3'- -CCCGCa---CCCGGaGCCGGU---GC-GCa---GGG- -5'
29380 3' -64 NC_006151.1 + 126411 0.7 0.351698
Target:  5'- -cGCGUcgGGGCgaUGGCCACGCGcCgCCg -3'
miRNA:   3'- ccCGCA--CCCGgaGCCGGUGCGCaG-GG- -5'
29380 3' -64 NC_006151.1 + 126081 0.67 0.527923
Target:  5'- gGGGcCGUGaucucGGCCgUCGGCgGCaugGUGUCCUu -3'
miRNA:   3'- -CCC-GCAC-----CCGG-AGCCGgUG---CGCAGGG- -5'
29380 3' -64 NC_006151.1 + 126028 0.66 0.546574
Target:  5'- -----aGGGCCUCGGCgACGUGggcgCCg -3'
miRNA:   3'- cccgcaCCCGGAGCCGgUGCGCa---GGg -5'
29380 3' -64 NC_006151.1 + 125471 0.7 0.33722
Target:  5'- uGGCcacGGCCgcgcUCGGCCAgCGCGUCUCg -3'
miRNA:   3'- cCCGcacCCGG----AGCCGGU-GCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 125199 0.74 0.197133
Target:  5'- cGGcGuCGUGGGCCccgCGGCCccCGCGgccgCCCg -3'
miRNA:   3'- -CC-C-GCACCCGGa--GCCGGu-GCGCa---GGG- -5'
29380 3' -64 NC_006151.1 + 124682 0.72 0.247577
Target:  5'- -cGCGaggGGGCCcacggggagcacaUCGGCUACGCG-CCCg -3'
miRNA:   3'- ccCGCa--CCCGG-------------AGCCGGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 123929 0.67 0.53722
Target:  5'- cGGGCc---GCCUCGGCCuCGCcgacgCCCg -3'
miRNA:   3'- -CCCGcaccCGGAGCCGGuGCGca---GGG- -5'
29380 3' -64 NC_006151.1 + 123035 0.67 0.491381
Target:  5'- uGGCGUGGGCggaccugcCGGCCGCgGCG-CUg -3'
miRNA:   3'- cCCGCACCCGga------GCCGGUG-CGCaGGg -5'
29380 3' -64 NC_006151.1 + 122976 0.67 0.491381
Target:  5'- cGGCGacggGGGCgUCGGCgACGaagaCGggCCCg -3'
miRNA:   3'- cCCGCa---CCCGgAGCCGgUGC----GCa-GGG- -5'
29380 3' -64 NC_006151.1 + 122775 0.67 0.491381
Target:  5'- cGGGCugcucGUGGGC---GGCUGCGCGgccucgCCCg -3'
miRNA:   3'- -CCCG-----CACCCGgagCCGGUGCGCa-----GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.