Results 21 - 40 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29380 | 3' | -64 | NC_006151.1 | + | 132853 | 0.72 | 0.277506 |
Target: 5'- cGGGCGgccGGCCcggGGCCGCGCccCCCa -3' miRNA: 3'- -CCCGCac-CCGGag-CCGGUGCGcaGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 131105 | 0.72 | 0.259565 |
Target: 5'- cGGCGggGGGCC-CGGCCgcgGCGCGggaggCCg -3' miRNA: 3'- cCCGCa-CCCGGaGCCGG---UGCGCa----GGg -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 130962 | 0.67 | 0.53722 |
Target: 5'- cGGGCGcggGGGCCgguacccCGGCCGCcCGggCUg -3' miRNA: 3'- -CCCGCa--CCCGGa------GCCGGUGcGCa-GGg -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 130714 | 0.73 | 0.226533 |
Target: 5'- gGGGCGgcccggGGGCCcgcgCGGCCGCgGCGcagcgccaCCCa -3' miRNA: 3'- -CCCGCa-----CCCGGa---GCCGGUG-CGCa-------GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 130521 | 0.68 | 0.438909 |
Target: 5'- cGGGCGcGGGCgUCGcGUaCACGCc-CCCg -3' miRNA: 3'- -CCCGCaCCCGgAGC-CG-GUGCGcaGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 130475 | 0.7 | 0.336507 |
Target: 5'- aGGGCGaUGGccuGCCgcagCGcgcggcgccacacGCCGCGCGUCUCg -3' miRNA: 3'- -CCCGC-ACC---CGGa---GC-------------CGGUGCGCAGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 130353 | 0.67 | 0.527923 |
Target: 5'- cGGCGUcGuGGUUgaCGGCCGCGCGcgCCg -3' miRNA: 3'- cCCGCA-C-CCGGa-GCCGGUGCGCa-GGg -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 129795 | 0.71 | 0.288104 |
Target: 5'- cGGCGUGGGCCcgcaugaGGCCcgugagcgcggagcGCGCGgcggcguagCCCa -3' miRNA: 3'- cCCGCACCCGGag-----CCGG--------------UGCGCa--------GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 129447 | 0.67 | 0.500412 |
Target: 5'- uGGGCG-GGGCgCaCGGCCGuggGCGggacgagCCCg -3' miRNA: 3'- -CCCGCaCCCG-GaGCCGGUg--CGCa------GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 127385 | 0.71 | 0.309581 |
Target: 5'- gGGGUGgcggGGGCCgCGGCCGaguCGaCGggagCCCg -3' miRNA: 3'- -CCCGCa---CCCGGaGCCGGU---GC-GCa---GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 126411 | 0.7 | 0.351698 |
Target: 5'- -cGCGUcgGGGCgaUGGCCACGCGcCgCCg -3' miRNA: 3'- ccCGCA--CCCGgaGCCGGUGCGCaG-GG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 126081 | 0.67 | 0.527923 |
Target: 5'- gGGGcCGUGaucucGGCCgUCGGCgGCaugGUGUCCUu -3' miRNA: 3'- -CCC-GCAC-----CCGG-AGCCGgUG---CGCAGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 126028 | 0.66 | 0.546574 |
Target: 5'- -----aGGGCCUCGGCgACGUGggcgCCg -3' miRNA: 3'- cccgcaCCCGGAGCCGgUGCGCa---GGg -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 125471 | 0.7 | 0.33722 |
Target: 5'- uGGCcacGGCCgcgcUCGGCCAgCGCGUCUCg -3' miRNA: 3'- cCCGcacCCGG----AGCCGGU-GCGCAGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 125199 | 0.74 | 0.197133 |
Target: 5'- cGGcGuCGUGGGCCccgCGGCCccCGCGgccgCCCg -3' miRNA: 3'- -CC-C-GCACCCGGa--GCCGGu-GCGCa---GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 124682 | 0.72 | 0.247577 |
Target: 5'- -cGCGaggGGGCCcacggggagcacaUCGGCUACGCG-CCCg -3' miRNA: 3'- ccCGCa--CCCGG-------------AGCCGGUGCGCaGGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 123929 | 0.67 | 0.53722 |
Target: 5'- cGGGCc---GCCUCGGCCuCGCcgacgCCCg -3' miRNA: 3'- -CCCGcaccCGGAGCCGGuGCGca---GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 123035 | 0.67 | 0.491381 |
Target: 5'- uGGCGUGGGCggaccugcCGGCCGCgGCG-CUg -3' miRNA: 3'- cCCGCACCCGga------GCCGGUG-CGCaGGg -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 122976 | 0.67 | 0.491381 |
Target: 5'- cGGCGacggGGGCgUCGGCgACGaagaCGggCCCg -3' miRNA: 3'- cCCGCa---CCCGgAGCCGgUGC----GCa-GGG- -5' |
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29380 | 3' | -64 | NC_006151.1 | + | 122775 | 0.67 | 0.491381 |
Target: 5'- cGGGCugcucGUGGGC---GGCUGCGCGgccucgCCCg -3' miRNA: 3'- -CCCG-----CACCCGgagCCGGUGCGCa-----GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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