miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 10290 0.66 0.584448
Target:  5'- aGGCGgcGGGCa-CGuCC-CGCGUCCCc -3'
miRNA:   3'- cCCGCa-CCCGgaGCcGGuGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 10997 0.69 0.389787
Target:  5'- cGGGCcggGGGCCcCGGCuCGCcCG-CCCg -3'
miRNA:   3'- -CCCGca-CCCGGaGCCG-GUGcGCaGGG- -5'
29380 3' -64 NC_006151.1 + 11044 0.69 0.422139
Target:  5'- cGGCcggGGGCC-CGGCCuggACGCGggCCa -3'
miRNA:   3'- cCCGca-CCCGGaGCCGG---UGCGCagGG- -5'
29380 3' -64 NC_006151.1 + 11334 0.66 0.565429
Target:  5'- cGGGCGauaccgcgcGGGCCgcccgCGGgcgcuaCCGCGCGcUCCg -3'
miRNA:   3'- -CCCGCa--------CCCGGa----GCC------GGUGCGC-AGGg -5'
29380 3' -64 NC_006151.1 + 13408 0.67 0.491381
Target:  5'- cGGCcaaugggGGaGCCg-GGCC-CGCGUCCCc -3'
miRNA:   3'- cCCGca-----CC-CGGagCCGGuGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 13948 0.7 0.354647
Target:  5'- cGGGCGccccgGGGaCgcgcCGGCCAugggggagccgggccCGCGUCCCc -3'
miRNA:   3'- -CCCGCa----CCCgGa---GCCGGU---------------GCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 13998 0.66 0.57492
Target:  5'- gGGGCccacguGUGaGGCCcCGGCCAaUGgG-CCCg -3'
miRNA:   3'- -CCCG------CAC-CCGGaGCCGGU-GCgCaGGG- -5'
29380 3' -64 NC_006151.1 + 14673 0.66 0.57492
Target:  5'- cGGCGUcggGGaGCCUcgcccacccaccCGGCC-CcCGUCCCa -3'
miRNA:   3'- cCCGCA---CC-CGGA------------GCCGGuGcGCAGGG- -5'
29380 3' -64 NC_006151.1 + 15049 0.68 0.456053
Target:  5'- cGGCGcgcgGGGCCcCGGCgCcuucuGCGCGgCCCc -3'
miRNA:   3'- cCCGCa---CCCGGaGCCG-G-----UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 17108 0.66 0.594006
Target:  5'- gGGGCGccggGGGCUcCGGCgGCG-GUgCUg -3'
miRNA:   3'- -CCCGCa---CCCGGaGCCGgUGCgCAgGG- -5'
29380 3' -64 NC_006151.1 + 18492 0.67 0.53722
Target:  5'- -uGCGUGGGCaggcugguguacacCGGCgagagcaUGCGCGUCCCc -3'
miRNA:   3'- ccCGCACCCGga------------GCCG-------GUGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 19057 0.66 0.584448
Target:  5'- cGGGCGcaGGCaCUCGGgCGCGCG-Cg- -3'
miRNA:   3'- -CCCGCacCCG-GAGCCgGUGCGCaGgg -5'
29380 3' -64 NC_006151.1 + 19285 0.66 0.555978
Target:  5'- gGGGCccaccgGGGCCagCGGCgCGgGCGgccggucgCCCa -3'
miRNA:   3'- -CCCGca----CCCGGa-GCCG-GUgCGCa-------GGG- -5'
29380 3' -64 NC_006151.1 + 19389 0.67 0.518687
Target:  5'- uGGGCGUGGcccGCCggaCGGUCAggUGCGgcgaCCa -3'
miRNA:   3'- -CCCGCACC---CGGa--GCCGGU--GCGCag--GG- -5'
29380 3' -64 NC_006151.1 + 19818 0.66 0.565429
Target:  5'- aGGGacucGGGaCCUCGGUgACGgGgCCCg -3'
miRNA:   3'- -CCCgca-CCC-GGAGCCGgUGCgCaGGG- -5'
29380 3' -64 NC_006151.1 + 19857 0.67 0.518687
Target:  5'- cGGCGgagaggcucgGGGCCUCGGUgGagaGCG-CCa -3'
miRNA:   3'- cCCGCa---------CCCGGAGCCGgUg--CGCaGGg -5'
29380 3' -64 NC_006151.1 + 20136 0.67 0.518687
Target:  5'- gGGGCG-GGcGCCgcgggGGCgGCGCGUggaCCg -3'
miRNA:   3'- -CCCGCaCC-CGGag---CCGgUGCGCAg--GG- -5'
29380 3' -64 NC_006151.1 + 21443 0.75 0.18372
Target:  5'- cGGCGUGGGguggcCCcCGGCgGCGUgGUCCCg -3'
miRNA:   3'- cCCGCACCC-----GGaGCCGgUGCG-CAGGG- -5'
29380 3' -64 NC_006151.1 + 21519 0.69 0.4139
Target:  5'- gGGGCGggcucGGGCUUCGGCCGgG-G-CCg -3'
miRNA:   3'- -CCCGCa----CCCGGAGCCGGUgCgCaGGg -5'
29380 3' -64 NC_006151.1 + 21553 0.75 0.185461
Target:  5'- gGGGCcUGGGCCUCggcgagcccgccgagGGCCGCGCGgggUCg -3'
miRNA:   3'- -CCCGcACCCGGAG---------------CCGGUGCGCa--GGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.