miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 13998 0.66 0.57492
Target:  5'- gGGGCccacguGUGaGGCCcCGGCCAaUGgG-CCCg -3'
miRNA:   3'- -CCCG------CAC-CCGGaGCCGGU-GCgCaGGG- -5'
29380 3' -64 NC_006151.1 + 62287 0.66 0.57492
Target:  5'- -uGCGUGcucguGGCCagcgCGGCCuucgGCGUGUCCg -3'
miRNA:   3'- ccCGCAC-----CCGGa---GCCGG----UGCGCAGGg -5'
29380 3' -64 NC_006151.1 + 92749 0.66 0.57492
Target:  5'- cGGcGCGgcacGGGCaccugagCGuGCUgcgGCGCGUCCCc -3'
miRNA:   3'- -CC-CGCa---CCCGga-----GC-CGG---UGCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 14673 0.66 0.57492
Target:  5'- cGGCGUcggGGaGCCUcgcccacccaccCGGCC-CcCGUCCCa -3'
miRNA:   3'- cCCGCA---CC-CGGA------------GCCGGuGcGCAGGG- -5'
29380 3' -64 NC_006151.1 + 22272 0.66 0.57492
Target:  5'- cGGGCGggGGGaaggUCGGCgcgggCACGgCGUCCa -3'
miRNA:   3'- -CCCGCa-CCCgg--AGCCG-----GUGC-GCAGGg -5'
29380 3' -64 NC_006151.1 + 66868 0.66 0.57492
Target:  5'- gGGGCGgcgcgaaGGGCgCgccCGGCCcCGCG-CCg -3'
miRNA:   3'- -CCCGCa------CCCG-Ga--GCCGGuGCGCaGGg -5'
29380 3' -64 NC_006151.1 + 65827 0.66 0.569221
Target:  5'- uGGGCGgccgcgccagcgcGGCC-CGGCuCACGCcUCCUc -3'
miRNA:   3'- -CCCGCac-----------CCGGaGCCG-GUGCGcAGGG- -5'
29380 3' -64 NC_006151.1 + 19818 0.66 0.565429
Target:  5'- aGGGacucGGGaCCUCGGUgACGgGgCCCg -3'
miRNA:   3'- -CCCgca-CCC-GGAGCCGgUGCgCaGGG- -5'
29380 3' -64 NC_006151.1 + 137525 0.66 0.565429
Target:  5'- cGGGCGacgaggacUGGGCggaCUgGGaCgCGgGCGUCCCc -3'
miRNA:   3'- -CCCGC--------ACCCG---GAgCC-G-GUgCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 138333 0.66 0.565429
Target:  5'- -----cGGGCC-CGGCaCGCGCGcagCCCg -3'
miRNA:   3'- cccgcaCCCGGaGCCG-GUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 141380 0.66 0.565429
Target:  5'- cGGGgGcGGGCCcCGGgCaaacagcgGCGUGUCCg -3'
miRNA:   3'- -CCCgCaCCCGGaGCCgG--------UGCGCAGGg -5'
29380 3' -64 NC_006151.1 + 11334 0.66 0.565429
Target:  5'- cGGGCGauaccgcgcGGGCCgcccgCGGgcgcuaCCGCGCGcUCCg -3'
miRNA:   3'- -CCCGCa--------CCCGGa----GCC------GGUGCGC-AGGg -5'
29380 3' -64 NC_006151.1 + 56317 0.66 0.565429
Target:  5'- cGGUGccugagccUGGGCCggUGGCUggagcgcgcGCGCGcCCCg -3'
miRNA:   3'- cCCGC--------ACCCGGa-GCCGG---------UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 69577 0.66 0.565429
Target:  5'- cGGGUGccGcGCCgcgacgagcUCGGCCGCGCGgcgCaCCa -3'
miRNA:   3'- -CCCGCacC-CGG---------AGCCGGUGCGCa--G-GG- -5'
29380 3' -64 NC_006151.1 + 74618 0.66 0.562589
Target:  5'- aGGGCGUGcacgugcuccagcaGGuCCUuguacaCGGCgGCGCaGUCCUc -3'
miRNA:   3'- -CCCGCAC--------------CC-GGA------GCCGgUGCG-CAGGG- -5'
29380 3' -64 NC_006151.1 + 135091 0.66 0.555978
Target:  5'- gGGGCGgcgGGGCCgggcgggCGGCgguagCGCGCGg--- -3'
miRNA:   3'- -CCCGCa--CCCGGa------GCCG-----GUGCGCaggg -5'
29380 3' -64 NC_006151.1 + 19285 0.66 0.555978
Target:  5'- gGGGCccaccgGGGCCagCGGCgCGgGCGgccggucgCCCa -3'
miRNA:   3'- -CCCGca----CCCGGa-GCCG-GUgCGCa-------GGG- -5'
29380 3' -64 NC_006151.1 + 81522 0.66 0.555978
Target:  5'- -cGCGUGagcucggcGGCCgCGGCgGCGCGcUCCg -3'
miRNA:   3'- ccCGCAC--------CCGGaGCCGgUGCGC-AGGg -5'
29380 3' -64 NC_006151.1 + 95439 0.66 0.555978
Target:  5'- uGGCGaGGGCggC-GCCGCGCGUgUCCg -3'
miRNA:   3'- cCCGCaCCCGgaGcCGGUGCGCA-GGG- -5'
29380 3' -64 NC_006151.1 + 61049 0.66 0.555978
Target:  5'- cGGCGguaGGGCC--GGCCcgucaugacguAUGCGUCCg -3'
miRNA:   3'- cCCGCa--CCCGGagCCGG-----------UGCGCAGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.