miRNA display CGI


Results 81 - 100 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 57157 0.66 0.546574
Target:  5'- gGGGCGaGGGCgUCccCCgGCGCGgCCCa -3'
miRNA:   3'- -CCCGCaCCCGgAGccGG-UGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 57239 0.74 0.188099
Target:  5'- cGGcGCGcGcGGCCUCGGCgucCGCGCGgCCCu -3'
miRNA:   3'- -CC-CGCaC-CCGGAGCCG---GUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 57289 0.75 0.179431
Target:  5'- aGGGCGUccagcGcGGCCUUGGCgGCGCGgCCg -3'
miRNA:   3'- -CCCGCA-----C-CCGGAGCCGgUGCGCaGGg -5'
29380 3' -64 NC_006151.1 + 57383 0.68 0.456053
Target:  5'- aGGCGUGGcaggaccagGCCagGGCCGCGuCGaagacgCCCu -3'
miRNA:   3'- cCCGCACC---------CGGagCCGGUGC-GCa-----GGG- -5'
29380 3' -64 NC_006151.1 + 57518 0.67 0.518687
Target:  5'- cGGCGgcgGcGGCCgccuccggcgCGGCCGCGggcaCGUCgCCg -3'
miRNA:   3'- cCCGCa--C-CCGGa---------GCCGGUGC----GCAG-GG- -5'
29380 3' -64 NC_006151.1 + 57604 0.68 0.447436
Target:  5'- aGGCc--GGCCUCGGCCGCGgcCGcCUCg -3'
miRNA:   3'- cCCGcacCCGGAGCCGGUGC--GCaGGG- -5'
29380 3' -64 NC_006151.1 + 57841 0.7 0.366612
Target:  5'- aGGGCGcacGGGUgCUCcacggcgcuGGUCGCGCGcCCCg -3'
miRNA:   3'- -CCCGCa--CCCG-GAG---------CCGGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 57927 0.67 0.518687
Target:  5'- aGGGCGUGGaaggcgcggaaGCCgagcgCgGGCCACagccCGUCCg -3'
miRNA:   3'- -CCCGCACC-----------CGGa----G-CCGGUGc---GCAGGg -5'
29380 3' -64 NC_006151.1 + 58120 0.68 0.472669
Target:  5'- cGGGCGgGGucgcgucgcccgcGCCguacgCGGCCGCGUGcCaCCg -3'
miRNA:   3'- -CCCGCaCC-------------CGGa----GCCGGUGCGCaG-GG- -5'
29380 3' -64 NC_006151.1 + 58422 0.66 0.546574
Target:  5'- uGGGCGUGcGgcagccacGCCUCGGUgGCGUG-CgCg -3'
miRNA:   3'- -CCCGCAC-C--------CGGAGCCGgUGCGCaGgG- -5'
29380 3' -64 NC_006151.1 + 59297 0.72 0.248137
Target:  5'- cGGCGUGGcGCCcgCGGCUcaGCGgG-CCCg -3'
miRNA:   3'- cCCGCACC-CGGa-GCCGG--UGCgCaGGG- -5'
29380 3' -64 NC_006151.1 + 59353 0.67 0.507689
Target:  5'- aGGGCcgcgcgcacggGGcGCCgcgCGGCCGucguCGCGUCCa -3'
miRNA:   3'- -CCCGca---------CC-CGGa--GCCGGU----GCGCAGGg -5'
29380 3' -64 NC_006151.1 + 60202 0.69 0.4139
Target:  5'- cGGGCGUGaagauGGgCUC-GCCGCGCGcgCCg -3'
miRNA:   3'- -CCCGCAC-----CCgGAGcCGGUGCGCa-GGg -5'
29380 3' -64 NC_006151.1 + 60408 0.66 0.594006
Target:  5'- aGGGCGcgcacGGCCcagCGGCC-CaCGUCCUc -3'
miRNA:   3'- -CCCGCac---CCGGa--GCCGGuGcGCAGGG- -5'
29380 3' -64 NC_006151.1 + 60639 0.76 0.144681
Target:  5'- gGGGCG-GGGCUccCGGCCcgcgcCGCGUCCUc -3'
miRNA:   3'- -CCCGCaCCCGGa-GCCGGu----GCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 61049 0.66 0.555978
Target:  5'- cGGCGguaGGGCC--GGCCcgucaugacguAUGCGUCCg -3'
miRNA:   3'- cCCGCa--CCCGGagCCGG-----------UGCGCAGGg -5'
29380 3' -64 NC_006151.1 + 61769 0.68 0.427965
Target:  5'- gGGGcCGUGGuGCUgCGGCgcgaggccggccggCugGCGUUCCa -3'
miRNA:   3'- -CCC-GCACC-CGGaGCCG--------------GugCGCAGGG- -5'
29380 3' -64 NC_006151.1 + 62287 0.66 0.57492
Target:  5'- -uGCGUGcucguGGCCagcgCGGCCuucgGCGUGUCCg -3'
miRNA:   3'- ccCGCAC-----CCGGa---GCCGG----UGCGCAGGg -5'
29380 3' -64 NC_006151.1 + 63697 0.69 0.397722
Target:  5'- uGGGCGUGcGCguucgCGGCgACGUGgcgCCCg -3'
miRNA:   3'- -CCCGCACcCGga---GCCGgUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 63756 0.69 0.389787
Target:  5'- cGGCG-GGGCgucCUCGGCgCcccCGCGUCgCCa -3'
miRNA:   3'- cCCGCaCCCG---GAGCCG-Gu--GCGCAG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.