miRNA display CGI


Results 81 - 100 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 3' -64 NC_006151.1 + 86784 0.68 0.438909
Target:  5'- uGGGCG-GGGCUUCuGCCuaaaaGCGgggccUCCCc -3'
miRNA:   3'- -CCCGCaCCCGGAGcCGGug---CGC-----AGGG- -5'
29380 3' -64 NC_006151.1 + 85178 0.66 0.593049
Target:  5'- cGGGCGccgccgccccgcUGGGCaucgCGGaCCugcuggaGCGgGUCCCc -3'
miRNA:   3'- -CCCGC------------ACCCGga--GCC-GG-------UGCgCAGGG- -5'
29380 3' -64 NC_006151.1 + 84572 0.66 0.584448
Target:  5'- -aGCGaGGGCCUCGa-CGCGCGcCUCg -3'
miRNA:   3'- ccCGCaCCCGGAGCcgGUGCGCaGGG- -5'
29380 3' -64 NC_006151.1 + 84475 0.71 0.316325
Target:  5'- -cGCGUGGuucGCCUUcgaGGCCGCuGCGaUCCCg -3'
miRNA:   3'- ccCGCACC---CGGAG---CCGGUG-CGC-AGGG- -5'
29380 3' -64 NC_006151.1 + 84397 0.66 0.578728
Target:  5'- cGGGCGgggagcgggUGGGCgcggugauaaggcggCgcgCGGCgGCGCGcggCCCa -3'
miRNA:   3'- -CCCGC---------ACCCG---------------Ga--GCCGgUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 83564 0.69 0.397722
Target:  5'- cGGGCG-GGcCCUCGaCCGCGgG-CCCg -3'
miRNA:   3'- -CCCGCaCCcGGAGCcGGUGCgCaGGG- -5'
29380 3' -64 NC_006151.1 + 83309 0.67 0.509515
Target:  5'- uGGCGUagacguugcgcaGGGCCgugagcaGG-CGCGCGUCCa -3'
miRNA:   3'- cCCGCA------------CCCGGag-----CCgGUGCGCAGGg -5'
29380 3' -64 NC_006151.1 + 82685 0.68 0.445723
Target:  5'- cGGGCGaGGGCggCGGCCccCGCGagggccaggaggCCCg -3'
miRNA:   3'- -CCCGCaCCCGgaGCCGGu-GCGCa-----------GGG- -5'
29380 3' -64 NC_006151.1 + 81678 0.66 0.584448
Target:  5'- cGGCGguacGCCUCGGCgACG-GUCgCCc -3'
miRNA:   3'- cCCGCacc-CGGAGCCGgUGCgCAG-GG- -5'
29380 3' -64 NC_006151.1 + 81571 0.66 0.584448
Target:  5'- uGGuGCGgagcaGGGUCUCG--CGCGCGUCgCCg -3'
miRNA:   3'- -CC-CGCa----CCCGGAGCcgGUGCGCAG-GG- -5'
29380 3' -64 NC_006151.1 + 81522 0.66 0.555978
Target:  5'- -cGCGUGagcucggcGGCCgCGGCgGCGCGcUCCg -3'
miRNA:   3'- ccCGCAC--------CCGGaGCCGgUGCGC-AGGg -5'
29380 3' -64 NC_006151.1 + 81096 0.68 0.456053
Target:  5'- aGGUGcUGGGaCUCGGgCAUGCGaUCCg -3'
miRNA:   3'- cCCGC-ACCCgGAGCCgGUGCGC-AGGg -5'
29380 3' -64 NC_006151.1 + 80701 0.68 0.473552
Target:  5'- cGGCGcGGGCCUCacgaCCugGCGUUUa -3'
miRNA:   3'- cCCGCaCCCGGAGcc--GGugCGCAGGg -5'
29380 3' -64 NC_006151.1 + 79263 0.68 0.447436
Target:  5'- cGGCGc-GGUCUCGacGCCGCGCGgcgUCCg -3'
miRNA:   3'- cCCGCacCCGGAGC--CGGUGCGCa--GGG- -5'
29380 3' -64 NC_006151.1 + 79120 0.69 0.381956
Target:  5'- uGGC-UGGGCCaCGGCCGCcccauCGUCgCCg -3'
miRNA:   3'- cCCGcACCCGGaGCCGGUGc----GCAG-GG- -5'
29380 3' -64 NC_006151.1 + 78698 0.72 0.259565
Target:  5'- cGGcCG-GGGCCUCGucGCCGCGaCGgcgCCCg -3'
miRNA:   3'- cCC-GCaCCCGGAGC--CGGUGC-GCa--GGG- -5'
29380 3' -64 NC_006151.1 + 78535 0.68 0.430476
Target:  5'- cGGCGgGGGCCUCGccGCCgACGaCGaagcacgCCCg -3'
miRNA:   3'- cCCGCaCCCGGAGC--CGG-UGC-GCa------GGG- -5'
29380 3' -64 NC_006151.1 + 78394 0.66 0.594006
Target:  5'- gGGGCGgccacgGcGGCuCUCgGGCCGCgaGCGccguggCCCa -3'
miRNA:   3'- -CCCGCa-----C-CCG-GAG-CCGGUG--CGCa-----GGG- -5'
29380 3' -64 NC_006151.1 + 78142 0.7 0.350964
Target:  5'- cGGGCGccucGGacgacGCCUCGGCCGCcguggucgaggccGUGUCCg -3'
miRNA:   3'- -CCCGCa---CC-----CGGAGCCGGUG-------------CGCAGGg -5'
29380 3' -64 NC_006151.1 + 77522 0.76 0.137508
Target:  5'- uGGCGc--GCCUCGGCCGCGCGUgggccgcCCCg -3'
miRNA:   3'- cCCGCaccCGGAGCCGGUGCGCA-------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.