miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29380 5' -49.7 NC_006151.1 + 27296 0.66 0.996428
Target:  5'- ------cGCGCUUG--GggGGCGUGg -3'
miRNA:   3'- ucuucuaCGCGAACaaCuuCCGCACg -5'
29380 5' -49.7 NC_006151.1 + 20876 0.66 0.996428
Target:  5'- uAGcAGgcGCGCUUGggGucGAGGCGcaGCa -3'
miRNA:   3'- -UCuUCuaCGCGAACaaC--UUCCGCa-CG- -5'
29380 5' -49.7 NC_006151.1 + 52960 0.66 0.995794
Target:  5'- -uGAGGUGCGCg---UGcAGGCG-GCu -3'
miRNA:   3'- ucUUCUACGCGaacaACuUCCGCaCG- -5'
29380 5' -49.7 NC_006151.1 + 15032 0.66 0.995516
Target:  5'- gAGGAGGUGCGCguccac--GGCGcGCg -3'
miRNA:   3'- -UCUUCUACGCGaacaacuuCCGCaCG- -5'
29380 5' -49.7 NC_006151.1 + 98947 0.66 0.995071
Target:  5'- cGAGGcgGCGCgggccgUGgacGAGGCG-GCg -3'
miRNA:   3'- uCUUCuaCGCGa-----ACaacUUCCGCaCG- -5'
29380 5' -49.7 NC_006151.1 + 44736 0.66 0.995071
Target:  5'- aAGAAGccgagcAUGCGCgcgggUGUUGu--GUGUGCg -3'
miRNA:   3'- -UCUUC------UACGCGa----ACAACuucCGCACG- -5'
29380 5' -49.7 NC_006151.1 + 42988 0.66 0.995071
Target:  5'- gAGAagAGAUGCG---GggGAGGGCGgcggGCg -3'
miRNA:   3'- -UCU--UCUACGCgaaCaaCUUCCGCa---CG- -5'
29380 5' -49.7 NC_006151.1 + 118422 0.66 0.99425
Target:  5'- gAGGAGAcgacggGCGC-----GGAGGUGUGCg -3'
miRNA:   3'- -UCUUCUa-----CGCGaacaaCUUCCGCACG- -5'
29380 5' -49.7 NC_006151.1 + 8564 0.66 0.996428
Target:  5'- gAGAGcGUGCGUgugggugggUGggugUGAGGGCcgGUGCg -3'
miRNA:   3'- -UCUUcUACGCGa--------ACa---ACUUCCG--CACG- -5'
29380 5' -49.7 NC_006151.1 + 11730 0.67 0.993323
Target:  5'- gGGggGAgcggGgGUgaGggGGAGGgGUGCg -3'
miRNA:   3'- -UCuuCUa---CgCGaaCaaCUUCCgCACG- -5'
29380 5' -49.7 NC_006151.1 + 25267 0.67 0.989806
Target:  5'- ---uGGUGCGCgaGUUGguGuGUGUGCu -3'
miRNA:   3'- ucuuCUACGCGaaCAACuuC-CGCACG- -5'
29380 5' -49.7 NC_006151.1 + 67764 0.67 0.989806
Target:  5'- -cGGGGUGCgGCgucgcGUUGAGGGCGUcCa -3'
miRNA:   3'- ucUUCUACG-CGaa---CAACUUCCGCAcG- -5'
29380 5' -49.7 NC_006151.1 + 8612 0.67 0.99111
Target:  5'- gGGccGGUGCGggUG-UGAGGGUccuGUGCg -3'
miRNA:   3'- -UCuuCUACGCgaACaACUUCCG---CACG- -5'
29380 5' -49.7 NC_006151.1 + 94509 0.67 0.992279
Target:  5'- aGGAGGcccAUGaCGCg----GGAGGCGUGUa -3'
miRNA:   3'- -UCUUC---UAC-GCGaacaaCUUCCGCACG- -5'
29380 5' -49.7 NC_006151.1 + 46102 0.67 0.992279
Target:  5'- gAGGAGGUGCGCcacgaGGAGGCcgaaggGCa -3'
miRNA:   3'- -UCUUCUACGCGaacaaCUUCCGca----CG- -5'
29380 5' -49.7 NC_006151.1 + 29805 0.67 0.993323
Target:  5'- gGGGAGggGUGgUggugGUaGAGGGCGgugGCg -3'
miRNA:   3'- -UCUUCuaCGCgAa---CAaCUUCCGCa--CG- -5'
29380 5' -49.7 NC_006151.1 + 103670 0.68 0.986752
Target:  5'- gAGAAGGcgGCGCgcgcGgcGggGGUGcUGCg -3'
miRNA:   3'- -UCUUCUa-CGCGaa--CaaCuuCCGC-ACG- -5'
29380 5' -49.7 NC_006151.1 + 63499 0.68 0.978591
Target:  5'- aAGAAGGUG-GCcaggUGggGGCGcGCg -3'
miRNA:   3'- -UCUUCUACgCGaacaACuuCCGCaCG- -5'
29380 5' -49.7 NC_006151.1 + 24053 0.68 0.978591
Target:  5'- uGGAGAUGCGCa-----AAGGUGUGUg -3'
miRNA:   3'- uCUUCUACGCGaacaacUUCCGCACG- -5'
29380 5' -49.7 NC_006151.1 + 65359 0.69 0.976068
Target:  5'- uGAAGAcGCGCccc---AGGGCGUGCa -3'
miRNA:   3'- uCUUCUaCGCGaacaacUUCCGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.