miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 64232 0.67 0.933868
Target:  5'- gGCGUacaGGGcCGCGAcGGcGGCGCgggCCACGc -3'
miRNA:   3'- -CGCA---CCU-GUGCU-UCuUCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 96222 0.67 0.933868
Target:  5'- gGCGgcGGcCGCGgcGAGGCGCacaaagaacuggUCCAUGg -3'
miRNA:   3'- -CGCa-CCuGUGCuuCUUCGCG------------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 115168 0.67 0.933868
Target:  5'- gGCGaagccGCGCGGcaGGggGCGCUCCAg- -3'
miRNA:   3'- -CGCacc--UGUGCU--UCuuCGCGAGGUgc -5'
29381 3' -53.9 NC_006151.1 + 116115 0.67 0.933362
Target:  5'- gGCGcGGcgcuugucgggcaGCACGAAGccGCGCgagcCCGCGa -3'
miRNA:   3'- -CGCaCC-------------UGUGCUUCuuCGCGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 84738 0.67 0.9287
Target:  5'- uCGUGGuGCuCGAGGAgacGGCGCgcgCCGCc -3'
miRNA:   3'- cGCACC-UGuGCUUCU---UCGCGa--GGUGc -5'
29381 3' -53.9 NC_006151.1 + 51165 0.67 0.923288
Target:  5'- cGCGgugaUGGugACGugcAGGGccCGCUCCACGa -3'
miRNA:   3'- -CGC----ACCugUGC---UUCUucGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 82380 0.67 0.923288
Target:  5'- ---cGGGCGCGucGAAGgccacgaGCUCCGCGc -3'
miRNA:   3'- cgcaCCUGUGCuuCUUCg------CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 91057 0.67 0.923288
Target:  5'- gGCGcuggaGGAgACGGAGAAGuCGaggCCGCGg -3'
miRNA:   3'- -CGCa----CCUgUGCUUCUUC-GCga-GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 120787 0.67 0.923288
Target:  5'- ---cGGACGCGGccgacgcGGAGCGCgCCGCGc -3'
miRNA:   3'- cgcaCCUGUGCUu------CUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 102446 0.68 0.917633
Target:  5'- gGCGcUGGACGCGcucGAGuccgGGgGCUCCuACGc -3'
miRNA:   3'- -CGC-ACCUGUGC---UUCu---UCgCGAGG-UGC- -5'
29381 3' -53.9 NC_006151.1 + 10909 0.68 0.917633
Target:  5'- gGCGcGGAC-CGggGucGgGC-CCACGg -3'
miRNA:   3'- -CGCaCCUGuGCuuCuuCgCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 64881 0.68 0.917633
Target:  5'- gGCGggagcagGGcCGCGAAGAgcacgcagcGGCGCgcgagcaccUCCACGg -3'
miRNA:   3'- -CGCa------CCuGUGCUUCU---------UCGCG---------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 77926 0.68 0.917633
Target:  5'- cCGUGGugGUGAAGGgcgGGCGCgcggcccCCACGc -3'
miRNA:   3'- cGCACCugUGCUUCU---UCGCGa------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 55889 0.68 0.917633
Target:  5'- cGCGgcGGACgugcgccggGCGAccGAGCgGCUCCGCGa -3'
miRNA:   3'- -CGCa-CCUG---------UGCUucUUCG-CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 111828 0.68 0.914123
Target:  5'- cCGUGGAcCugGAAGAcgcaccgcgucggggGGCGCUCgGgGu -3'
miRNA:   3'- cGCACCU-GugCUUCU---------------UCGCGAGgUgC- -5'
29381 3' -53.9 NC_006151.1 + 118432 0.68 0.914123
Target:  5'- ---cGGGCGCGGAGGuguGCGCgcggcucggccuggCCGCGg -3'
miRNA:   3'- cgcaCCUGUGCUUCUu--CGCGa-------------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 54919 0.68 0.911734
Target:  5'- cGCGUGcACgGCGAGGugcuGGCGUgCCACGc -3'
miRNA:   3'- -CGCACcUG-UGCUUCu---UCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 139540 0.68 0.911734
Target:  5'- gGCGUccaggucgGGGaGCGAGGAgcGGCGCccggUCCGCGa -3'
miRNA:   3'- -CGCA--------CCUgUGCUUCU--UCGCG----AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 82277 0.68 0.911734
Target:  5'- aGCGUcacguugaagacGGcCGCGggGcAGCGCgccUCCGCGu -3'
miRNA:   3'- -CGCA------------CCuGUGCuuCuUCGCG---AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 4315 0.68 0.911734
Target:  5'- cGCG-GGGCACGcGGccGgGCUgCGCGg -3'
miRNA:   3'- -CGCaCCUGUGCuUCuuCgCGAgGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.