miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 85297 0.66 0.947919
Target:  5'- cGCGUGc-CGCGc--GAGCaGCUCCACGg -3'
miRNA:   3'- -CGCACcuGUGCuucUUCG-CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 99441 0.66 0.947919
Target:  5'- uCGcGGACACGcuGGAGCccCUCUACGg -3'
miRNA:   3'- cGCaCCUGUGCuuCUUCGc-GAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 133985 0.66 0.947919
Target:  5'- -gGUGGAgACGAuggaAGAgAGCGCgggggCCACc -3'
miRNA:   3'- cgCACCUgUGCU----UCU-UCGCGa----GGUGc -5'
29381 3' -53.9 NC_006151.1 + 17373 0.67 0.945282
Target:  5'- cCGUGGggucggaccguguccGCACGAcGggGCGCguggCgCGCGg -3'
miRNA:   3'- cGCACC---------------UGUGCUuCuuCGCGa---G-GUGC- -5'
29381 3' -53.9 NC_006151.1 + 57196 0.67 0.943476
Target:  5'- uCGUGG-CGCGAGGcgaAGGCccGCUCgACGa -3'
miRNA:   3'- cGCACCuGUGCUUC---UUCG--CGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 120377 0.67 0.943476
Target:  5'- aGCGcccGGACACGGccguGGAcGUGCUCaACGg -3'
miRNA:   3'- -CGCa--CCUGUGCU----UCUuCGCGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 7159 0.67 0.943476
Target:  5'- cGCGcGGGCGCGAGGc-GCauGCUCgGCa -3'
miRNA:   3'- -CGCaCCUGUGCUUCuuCG--CGAGgUGc -5'
29381 3' -53.9 NC_006151.1 + 64541 0.67 0.943476
Target:  5'- cGCGUcGGGgGCGgcGAGGCcguggcgcgccaGCUCgACGa -3'
miRNA:   3'- -CGCA-CCUgUGCuuCUUCG------------CGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 102946 0.67 0.943476
Target:  5'- cGCGcUGGACGCGgcGcccGcCGC-CCACGa -3'
miRNA:   3'- -CGC-ACCUGUGCuuCuu-C-GCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 104365 0.67 0.943476
Target:  5'- gGCGccGACACGGAGc--CGCUCuCGCGg -3'
miRNA:   3'- -CGCacCUGUGCUUCuucGCGAG-GUGC- -5'
29381 3' -53.9 NC_006151.1 + 108482 0.67 0.943476
Target:  5'- aGCG-GGGCGCGcAGAcaAGUGCgaacaCACGg -3'
miRNA:   3'- -CGCaCCUGUGCuUCU--UCGCGag---GUGC- -5'
29381 3' -53.9 NC_006151.1 + 117495 0.67 0.943476
Target:  5'- aCGUGGAaGCGcucGAAGCGCggacUCACGg -3'
miRNA:   3'- cGCACCUgUGCuu-CUUCGCGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 130384 0.67 0.943476
Target:  5'- gGCGUccaGCGCGAAGGccAGCGCcucgcCCGCGa -3'
miRNA:   3'- -CGCAcc-UGUGCUUCU--UCGCGa----GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 123036 0.67 0.938793
Target:  5'- gGCGUGGGCGgaccUGccGGccgcGGCGCUgCGCGa -3'
miRNA:   3'- -CGCACCUGU----GCuuCU----UCGCGAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 46085 0.67 0.938793
Target:  5'- gGgGUGaaGACuauacCGAGGAGGUGCgCCACGa -3'
miRNA:   3'- -CgCAC--CUGu----GCUUCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 62505 0.67 0.935867
Target:  5'- gGCGcGGACgACGGcccggcgguaccugcAGAAGCGcCUgCACGg -3'
miRNA:   3'- -CGCaCCUG-UGCU---------------UCUUCGC-GAgGUGC- -5'
29381 3' -53.9 NC_006151.1 + 95558 0.67 0.935867
Target:  5'- --aUGGGCAgGGAcucgacgccgaggccGAGGCGCUCCAgGc -3'
miRNA:   3'- cgcACCUGUgCUU---------------CUUCGCGAGGUgC- -5'
29381 3' -53.9 NC_006151.1 + 96222 0.67 0.933868
Target:  5'- gGCGgcGGcCGCGgcGAGGCGCacaaagaacuggUCCAUGg -3'
miRNA:   3'- -CGCa-CCuGUGCuuCUUCGCG------------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 64232 0.67 0.933868
Target:  5'- gGCGUacaGGGcCGCGAcGGcGGCGCgggCCACGc -3'
miRNA:   3'- -CGCA---CCU-GUGCU-UCuUCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 113177 0.67 0.933868
Target:  5'- aCGUGGcCACGggGGAGCcCaaCGCGc -3'
miRNA:   3'- cGCACCuGUGCuuCUUCGcGagGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.