miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 103651 0.66 0.956095
Target:  5'- gGCGgacgcGGACACGGcggAGAaggcGGCGCgcgCgGCGg -3'
miRNA:   3'- -CGCa----CCUGUGCU---UCU----UCGCGa--GgUGC- -5'
29381 3' -53.9 NC_006151.1 + 5053 0.66 0.956095
Target:  5'- gGCGgaggaGGAgGCGGAGGAGgccgagggcCGCggggCCGCGg -3'
miRNA:   3'- -CGCa----CCUgUGCUUCUUC---------GCGa---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 10101 0.66 0.956095
Target:  5'- gGCG-GGuGCGgagGAGGAAGCGCUCgCGCc -3'
miRNA:   3'- -CGCaCC-UGUg--CUUCUUCGCGAG-GUGc -5'
29381 3' -53.9 NC_006151.1 + 58797 0.66 0.956095
Target:  5'- aCGUGGAC-----GAAGCGCgCCGCGu -3'
miRNA:   3'- cGCACCUGugcuuCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 90654 0.66 0.956095
Target:  5'- gGCGUGuacauGCGCGggGcGGCGggCCGCu -3'
miRNA:   3'- -CGCACc----UGUGCuuCuUCGCgaGGUGc -5'
29381 3' -53.9 NC_006151.1 + 96765 0.66 0.956095
Target:  5'- gGCGUGugcucGACACGggGAGGUGa---GCGg -3'
miRNA:   3'- -CGCAC-----CUGUGCuuCUUCGCgaggUGC- -5'
29381 3' -53.9 NC_006151.1 + 3931 0.66 0.952124
Target:  5'- aGCGgGGGCAgGccGGgcGCggGCUCCGCGg -3'
miRNA:   3'- -CGCaCCUGUgCu-UCuuCG--CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 88126 0.66 0.952124
Target:  5'- aGCGggcGGGCGCuccgcacguuGAGcaggccGggGUGCUCCGCGc -3'
miRNA:   3'- -CGCa--CCUGUG----------CUU------CuuCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 101223 0.66 0.952124
Target:  5'- gGCGUGGACggggcccgGCGggGGcauGUGCgCCAUc -3'
miRNA:   3'- -CGCACCUG--------UGCuuCUu--CGCGaGGUGc -5'
29381 3' -53.9 NC_006151.1 + 122958 0.66 0.952124
Target:  5'- cGCGggGGGCGCGGacgccggcgacGGggGCG-UCgGCGa -3'
miRNA:   3'- -CGCa-CCUGUGCU-----------UCuuCGCgAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 33981 0.66 0.952124
Target:  5'- cGCGgGGACAcucuuuccccCGGAGggGCGUcCCGgCGc -3'
miRNA:   3'- -CGCaCCUGU----------GCUUCuuCGCGaGGU-GC- -5'
29381 3' -53.9 NC_006151.1 + 77225 0.66 0.952124
Target:  5'- cGCGUGuGuGCGCcGGGAGGCGCcCCcCGg -3'
miRNA:   3'- -CGCAC-C-UGUGcUUCUUCGCGaGGuGC- -5'
29381 3' -53.9 NC_006151.1 + 45183 0.66 0.952124
Target:  5'- gGCGUgcccgccaccacGGACgGCGAcGggGUGCgCCGCGc -3'
miRNA:   3'- -CGCA------------CCUG-UGCUuCuuCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 94572 0.66 0.951714
Target:  5'- --aUGGACugGcugugguccacaaAGGggGCGCggUCCGCGc -3'
miRNA:   3'- cgcACCUGugC-------------UUCuuCGCG--AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 117423 0.66 0.947919
Target:  5'- aGCGUGacCACcgugccguuGggGAAGCGCgggUCCGCGc -3'
miRNA:   3'- -CGCACcuGUG---------CuuCUUCGCG---AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 56237 0.66 0.947919
Target:  5'- cCGaGGACccgACGGAGuucGCGCUCUGCGu -3'
miRNA:   3'- cGCaCCUG---UGCUUCuu-CGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 63522 0.66 0.947919
Target:  5'- cGCG-GGGCGguCGggGAAGaCGCcggcgaCCACGu -3'
miRNA:   3'- -CGCaCCUGU--GCuuCUUC-GCGa-----GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 85297 0.66 0.947919
Target:  5'- cGCGUGc-CGCGc--GAGCaGCUCCACGg -3'
miRNA:   3'- -CGCACcuGUGCuucUUCG-CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 99441 0.66 0.947919
Target:  5'- uCGcGGACACGcuGGAGCccCUCUACGg -3'
miRNA:   3'- cGCaCCUGUGCuuCUUCGc-GAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 85153 0.66 0.947919
Target:  5'- cGCGUGcGGCAgGggGccggcgccgcGGGCGCcgCCGCc -3'
miRNA:   3'- -CGCAC-CUGUgCuuC----------UUCGCGa-GGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.