miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29381 3' -53.9 NC_006151.1 + 23028 0.7 0.823197
Target:  5'- -gGUGGAggcgGCGAAGAAGCGggcggCCGCGg -3'
miRNA:   3'- cgCACCUg---UGCUUCUUCGCga---GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 23992 0.68 0.904967
Target:  5'- gGUGcGGAcCACGAGGAgcccgagGGCGaggaUCCACGu -3'
miRNA:   3'- -CGCaCCU-GUGCUUCU-------UCGCg---AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 27307 0.68 0.905595
Target:  5'- gGCGUGGGgGuCGAggcgggggacgGGggGCuGCUCCcCGg -3'
miRNA:   3'- -CGCACCUgU-GCU-----------UCuuCG-CGAGGuGC- -5'
29381 3' -53.9 NC_006151.1 + 28107 0.79 0.38198
Target:  5'- aGCG-GGGCGCGGcuccucgucggcucgGGgcGCGCUCCGCGc -3'
miRNA:   3'- -CGCaCCUGUGCU---------------UCuuCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 29404 0.67 0.933868
Target:  5'- gGCG-GGACcgcGCGGAGAAG-GCUcgguguggCCGCGg -3'
miRNA:   3'- -CGCaCCUG---UGCUUCUUCgCGA--------GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 29446 0.7 0.840045
Target:  5'- gGCGgggagaggGGACGCGGAGGgagcgGGCGCgCCGgGa -3'
miRNA:   3'- -CGCa-------CCUGUGCUUCU-----UCGCGaGGUgC- -5'
29381 3' -53.9 NC_006151.1 + 30836 0.67 0.933868
Target:  5'- uGCGUGGGCggagaggaGCGAGGAGGacugGCggCgGCGg -3'
miRNA:   3'- -CGCACCUG--------UGCUUCUUCg---CGa-GgUGC- -5'
29381 3' -53.9 NC_006151.1 + 30896 0.66 0.966647
Target:  5'- gGCGagcGGAgCGCGcGGuAGCGC-CCGCGg -3'
miRNA:   3'- -CGCa--CCU-GUGCuUCuUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 31574 0.71 0.768676
Target:  5'- aCGUGauCACGggGggGCggcgcGCUCCGCGc -3'
miRNA:   3'- cGCACcuGUGCuuCuuCG-----CGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 31721 0.78 0.404112
Target:  5'- gGCGgaacgGGGCGUGGAGAGGCGC-CCGCGc -3'
miRNA:   3'- -CGCa----CCUGUGCUUCUUCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 32598 0.7 0.823197
Target:  5'- aGCG-GGAa--GggGAAGCGCggggcgCCGCGc -3'
miRNA:   3'- -CGCaCCUgugCuuCUUCGCGa-----GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 33096 0.66 0.966647
Target:  5'- gGCGguggaggggGGAgAgGAAGGucugGGCGCgugCCGCGg -3'
miRNA:   3'- -CGCa--------CCUgUgCUUCU----UCGCGa--GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 33981 0.66 0.952124
Target:  5'- cGCGgGGACAcucuuuccccCGGAGggGCGUcCCGgCGc -3'
miRNA:   3'- -CGCaCCUGU----------GCUUCuuCGCGaGGU-GC- -5'
29381 3' -53.9 NC_006151.1 + 34619 0.66 0.963352
Target:  5'- aGCGcGaGGCGCGGGuGggGCGa-CCGCGg -3'
miRNA:   3'- -CGCaC-CUGUGCUU-CuuCGCgaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 35172 0.66 0.956095
Target:  5'- aGCGggccGGGCAUGcaaaucAGAGGCGCgcgggagacgccUCCGCGc -3'
miRNA:   3'- -CGCa---CCUGUGCu-----UCUUCGCG------------AGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 38208 0.71 0.796618
Target:  5'- aGCGUGGACGgGGccc-GCGC-CCGCGa -3'
miRNA:   3'- -CGCACCUGUgCUucuuCGCGaGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 39702 0.72 0.719753
Target:  5'- cCGUGGACGgcUGcAAGGacauggcccgccAGCGCUCCGCGc -3'
miRNA:   3'- cGCACCUGU--GC-UUCU------------UCGCGAGGUGC- -5'
29381 3' -53.9 NC_006151.1 + 40571 0.69 0.871375
Target:  5'- gGCGgcGGcCGCGgcGGAGgGCUCgGCGg -3'
miRNA:   3'- -CGCa-CCuGUGCuuCUUCgCGAGgUGC- -5'
29381 3' -53.9 NC_006151.1 + 41493 0.72 0.729729
Target:  5'- cGCGUGG-CGCGAGGGgagccaauGGgGCgggcgCCGCGg -3'
miRNA:   3'- -CGCACCuGUGCUUCU--------UCgCGa----GGUGC- -5'
29381 3' -53.9 NC_006151.1 + 45183 0.66 0.952124
Target:  5'- gGCGUgcccgccaccacGGACgGCGAcGggGUGCgCCGCGc -3'
miRNA:   3'- -CGCA------------CCUG-UGCUuCuuCGCGaGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.